G121445 (chd5,LOC107737210,LOC107691315)


Basic Information

Item Value
gene id G121445
gene name chd5,LOC107737210,LOC107691315
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6413013 ~ 6413274 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU152216
cctgtattgtgtgtgtgtaccgtTGGCTCTGGCTCCCTCCACGTCATCCTTAAAGAGCTCTTCGGTGCCGAACTTCAGGATGtcgtccagctcctgcttggaCATGGAGCCGGTCTTGGAGCCCAAGCCGGGCCGCACCACCAGGTGGGTCAGCATCATCTTGCGCTTGGCCACCTGGGTGATGCGCTCCTCCACCGAGGCCCGTGTCACGAAGCGGTAGATCATCACCTTCTTATTCTGACCGATACGATGGGCCCTACTG

Function

symbol description
chd5 Predicted to enable several functions, including ATP binding activity; DNA helicase activity; and metal ion binding activity. Acts upstream of or within ATP-dependent chromatin remodeling; embryonic viscerocranium morphogenesis; and head development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; eye; and testis. Orthologous to human CHD5 (chromodomain helicase DNA binding protein 5).

NR:

description
PREDICTED: chromodomain-helicase-DNA-binding protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152216 True 262 lncRNA 0.59 1 6413013 6413274

Neighbor

gene id symbol gene type direction distance location
AMCG00002185 rnf207b,LOC108434591,LOC107593377,LOC107712689,LOC106572244 coding downstream 31582 6357657 ~ 6381431 (-)
AMCG00002178 NA coding downstream 150708 6258047 ~ 6262305 (-)
AMCG00002177 NA coding downstream 165144 6247266 ~ 6247869 (-)
AMCG00002172 mrto4,LOC106582960 coding downstream 304529 6106190 ~ 6108484 (-)
AMCG00002173 megf6 coding downstream 327061 6033844 ~ 6085952 (-)
AMCG00002187 NA coding upstream 15091 6428365 ~ 6447619 (-)
AMCG00002191 espn coding upstream 38000 6451274 ~ 6500272 (-)
AMCG00002193 NA coding upstream 252840 6666114 ~ 6667451 (-)
AMCG00002198 NA coding upstream 269758 6683032 ~ 6706524 (-)
AMCG00002196 NA coding upstream 299723 6712997 ~ 6713197 (-)
G121444 NA non-coding downstream 5098 6407705 ~ 6407915 (-)
G121443 rpl22,LOC107737574,LOC107703077,LOC103047485,LOC107593380,LOC108414460 non-coding downstream 27094 6382433 ~ 6385919 (-)
G121403 NA non-coding downstream 135111 6277468 ~ 6277902 (-)
G121384 NA non-coding downstream 199353 6210585 ~ 6213660 (-)
G121288 NA non-coding downstream 475180 5933658 ~ 5937833 (-)
G121447 NA non-coding upstream 6767 6420041 ~ 6424298 (-)
G121689 NA non-coding upstream 1147803 7561077 ~ 7562747 (-)
G121716 NA non-coding upstream 1244558 7657832 ~ 7658851 (-)
G121718 NA non-coding upstream 1249712 7662986 ~ 7663677 (-)
G121754 NA non-coding upstream 1416919 7830193 ~ 7845316 (-)
AMCG00002167 NA other downstream 397620 5975725 ~ 6015393 (-)
G120993 NA other downstream 2193136 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 2626469 3784236 ~ 3786544 (-)
G120907 NA other downstream 2696761 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 2946552 3407485 ~ 3466461 (-)
AMCG00002223 NA other upstream 1413367 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 3195476 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 3344151 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 3417245 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 3423644 9836918 ~ 9853075 (-)

Expression


Co-expression Network