G121526


Basic Information

Item Value
gene id G121526
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6792976 ~ 6798043 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU152324
ACACAGGTTTTATTGCATATCAATTTCATGTATAAATTCTTCATAGCATTGGAAAGATTACATTTGGTATACATTCCTATTCTACAGAATTAACATCAGAATTTGAGaatattttaatggaatttCTCTAAAGAAGTACATCTTTAATAATCACAAGCATCAAAATGAACTGCAATTTCAGAAATAGGTgtttactttaatattattCTACAATCTTCcaaattttcattatttctctcgcacaagcatattttatttacttaataacCTTCTGCCCGTTTTCGTTTTGTTTCCGAAGGCAGTAAAAGACTTGAAGTCTCCAATGTACAACCTAACCACATGTACAATAAGTGCAtctacagatttttttctttctttctcgatttttttcattttttattttttttacattttttaaaatagttttatgaaAAATTTCACAAACGGACACCATTATGACCGCTAAACACAAGTCAtgcacagtattttttttttcttcttataaaCATAACAGAGGCGATATACAATTCAGGTCCAAATGAAACAAGCACCATCCATTTTAAACTTTCCCATATAATTTTTGACTTCCAGACATATacaacaatcttttttttcagtctttcttcctattaaagttttttttttttaataatatacagtttGAAAGAACCATATTACTTATGTTTGAACTGtaacagtggggggaaaaaaagaccaGCAACCACACCAATTTAGTTATGCAGTGACCCTTACTCAATTCCTTAAGAAAGCTGGTAATGTGatcttttacatttcataatttaTCTACAGACCTACAGCGCACACTTAAACAGTAGTATGTGACATGGATTTACCTCAGttatcttttattcaaaattaaaataaacttgttgAACCATAGTTTGCCTTTGCATATATTAAAGACTCTATTGTAACTTCTCTATATTTCCtttgtcattcattcattccccACTTGAAACTTTGTGAagagaaatgcaagaaaatagaaaatccaTCTATCGGGTGTCAATCTTCAGTACTGCAGTGCTTCAGAAAGAGAGGGATGGGCTCTGTCTCACAGTTATAGCCTTTTTCAAACGTGAAGCAATCACCCAGTTCAAGCTGCACTGTGAATCTGTCACTCCTTGCTTAGTCAAATCATGATTTTGACGATAATTCTGCTATGCAACTTCAGCAAAGATATTTCCAGCATGGACggaaacattacatatattaGGAAACGTGGGGTTTAATGTTCAAACACATTAACAGCATTATTTAGGCAAGAGTCATCCAAACAACAACTCTGATAGGTTTTTGCTTAGCTGGGTATGTCAGGTCAATAATCTGACTCTGTGACACCCCAGGCCTTTCTATGCAGAGTCCTCAGGCATTTTCTCCCAAGAGTTAAAGTGCTTATTTGAACCAATTAAGCCTCATCCTGAAATTCCGAGCAACACTGAGAGATACGGAGAAATTAAGACTCAGATACATACCTACTTTCATTTAACTGCCACCCCCCAAATAACAGTAGGGTAACTCTGCACTACTGAGGAACGAATCACAATGCAGTGAAGGTTACAACTGTATTCTTAATCCAGCAACTTGTGACACGGACTCCCCTTTAAACTCTCCCCCCCCAGTCGGCGGGACCACTGGGGCGCGGCCGCTAAGTGCAATTACAAACGTCGAGCCACGCAAACCGATATCCGATGAGAGCCCTGAATCATCCCGACGGCCCATCTAGCAAATCGATTGAAAGGAGATCGTGTTTCTCTGGGGTCACCCGTGACATGACGTAAAATAAAACCGTTACCGAAGGGGAGCTAAACAGGAATAGCACTGAGTATCTACCTGCCAACCTGGTGTACGTTCAGGGCACCAATCTGCGGTGGTGTGGGGGTGTGGTGCGCCGAGCAAAATGCAGCAAAGGGACAAACAATAGCATGACAATCAGCAACACTGGAGTGAAGGTTCTTCATTTAACTGTCAACAGTTAatctttttctttacatatatcataataataataaaaaacagcaataaaacattcttttacatattttacagaatgaACACGTTGGTTTACTGCAGTACATTTCACTGTCTGGTTTCACAGTTCAGAGGGGTGCTCTGGTGGGGGTAACGAAGGAGCGACGGGTCTCCCAGCAGCACAGACGCAGTTGGACCTCTAACGGCCCTGCGGTCGGAACGAAGGCCTCCACACTATGACACCAGGGACTCTGGGATTCACCTGTGCAAGCACACACTTCTCTATCTGTACTATCATTGCCTTTTCTGGGTTTTGAGAATTTGAGAGCTAGAACTGAACttatttacagacacacacacatccaggtGGTTCCTTCGACAAGCAGGACAGCACTTGGTCAGCATATGAAAACCACGCCGGGTCCAACAGCACAAAGATTAAACTGAACGGGGAAACATGCACAGGCATACTTGTCAAAGCGGATACATACGCCTTCTCTATCTTTTTAATGCCGTCTTTGTAAAGCTTCTCTTACCATATCTCATCCGTCCCAACCGAGCTCTTGTTCATTTAGTTAATTCGTATGAAATTACCAAAAGCAAAATGCTATCCTCCCAtccacattaataaaaacaccacTGGCATGATTAGTTTGCCGTGTGACACTTAAACGAGATGGAACTGCGATTATTTGGGGATTTTTATGTAAGGGGAGAAAAGAGTAAGATTAAAGACCAGTTTACTAATTAACCTGGTGCAGGACTGATAAGAGAAAGAGTTAAAAACAAGGTGACCTATGACCAACGGTTCCTTTGTATTTGCCCCCTGATGTGGCTCTAACAATAAGACGTCACCCATTTCGCACACAAACCCCCACCACACAAGAGACTGTGAGACGTGGGATTTGACTGCAGCGTTCAGCTGACGCACTGAATCTCAGAGCTGCAACAAGAGTCTGATCTTTCGGATTGAGAGTGGGGTTTACCGTCTGTCTCGTATGGCACACTGGTTCCACACACATGCCTGGATGCAGGGAAAATTCAAAATCTCaccttttcatctttttttttccttcaacgGAGTCAAGTGGACCAATCAgggagaggttttttttttgtccttttAAAGTtgtcaaatcaaacaaaatctacaggaaaaaacaacaacagcgacGAGAACCCTTCAAAAAGAAATGATTGtctggaaacaaaacattttctacgGGTTATTTGGCACACACAACTCTTGCTACGTACTTCCTGGTTATTTTAGACAACATCATACAacaatattacacaattttGGTCCTTcactaaataattatattaacattatttttgtttagcaCCGCCATGGTgcctaaagaaaaaaaaaaaagaaacaatactgTTATTATAGAACAAATAACATACAGAGTAAGGAAACACAAATGTTGAgtttatacaaattaatttaaattgaatatggAAGAAAGAGTTCTCAGAATTGGCCCCTATAGGGAAATAATTTAAAGTCCAAATAcctgcttacattttaaaacaaatatctttCGATTCATGTGGACTGTCCTCTTTGAGGAATGCATCGTCTGCTCGGGagtgtttgttaaattattctCACTACAGTTTTAGCTGCTTCTTGATAGTATAGTACTTCCATTGTGCAAAACCTCCATATGATTGTAATAATGGTGTGGATATTACGGTCACTGTTGAAAGGTATGTTCACCGAGGAATGTAACCATTAAAATCCATTATGCGACAGTGCAGAGGCAGCCGTGCTAAGACAGTGTGGAGCGAGCGGTCAGCGATCCCTCTGCCGGAGCCTGACAACACGCATCATGAGAACATGAGTCACATTGACGGGCAATCACTGAAGTGTTGCTCTTGTTTGTGCCTCCTGGATTCCTTCACTTTAGACATGTGATGCCACTGCTTGAGTTCACTGTAgcagtagtattaataataataatattaataggtAGCTAGGGAAATAAGTTTCATATGATTGTGATCTAAATTATGCGTTTAAAAATTAACCAAGCCCGCCTGACGAGTGGTATTTTACagatactgtatactgtacacTTCCTTTCCTGGCTGCTGGAGTTCTCACTAAAAGAGCTGGTGCTTTCCCTGGGTTAATGCCCCcaccatttaaaacattactttCTTTCACAGCCACTCAGATCCGGTGGGGGAGAAACTTAATTACTGTAGGTCTAAGCAAAAAAGTGTGACGATGGCTCTTAGCAGGCAGGGCAGTGGATTTAGCTAGTAATGCCTTCTGCAAACAAGAACAAttgctgtaattattattattattattattattattattattatcttaattCCAGCTTTAGAGGCTCAGACAGGAGTGACATAAACTGGATCAACCCAACCACCGAACTCGCTCTTGGTCCCCGTGACTGACAAGTCTGAATTAAGAGTGATGAACGTGTTTGtgtagttttgtttgtgttttctcccCCAATGGAGTGTGTTTTCTACAAGACACCAAACCTTCTACGTGCTGTTGGACAGTGACAGTAAGTGGCGCGCGACTGGGGGTGGGCTGGGCCGACTGCCGGACCTCCAGGCCTCTGACAGGGTGAAGCAGAGCCTCCGTGTTCCTCTCCCCGGCCAGCCGTCTGTCCACGCTGACCCTCGGGGTCGGAGTCGCTGGTCCCGGGGTCTCGcatcctctctctcctgctgtcGGGTGGAGTTGGTCCCACTGTTTACTTCGTGGCCAGGCTtcctctctgtccttctctctctttcgcactcccctcccctccccctcccttcccttccccctactctctctccctcccccccgccGCTCCTCTCTCGCGCTCTCAGATGTGGTTGAGTGGGTGAAAGCTGCTCGACTCTGATGCGCCCCCTCCCATGTTCAGCCAAGCATCCAGAGAGTTCTGGGAGGATGTGTGCAAAGGATTGTTTTCAGACAGAGACAGCATCATTGCATAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152324 True 4987 lncRNA 0.41 2 6792976 6798043

Neighbor

gene id symbol gene type direction distance location
AMCG00002195 wrap73,LOC107748967,LOC107595759 coding upstream 7002 6773923 ~ 6785974 (+)
AMCG00002194 NA coding upstream 67175 6714107 ~ 6725801 (+)
AMCG00002192 gpr153 coding upstream 137089 6635934 ~ 6655887 (+)
AMCG00002189 acot7,LOC107754737,LOC107693425 coding upstream 239502 6537081 ~ 6553474 (+)
AMCG00002188 NA coding upstream 270752 6520509 ~ 6522224 (+)
AMCG00002202 LOC107595762,LOC107602448,LOC107735586 coding downstream 312734 7110777 ~ 7119186 (+)
AMCG00002203 LOC106926566,LOC107691064 coding downstream 322536 7120579 ~ 7128460 (+)
AMCG00002204 NA coding downstream 347682 7145725 ~ 7150413 (+)
AMCG00002207 NA coding downstream 354430 7152473 ~ 7153321 (+)
AMCG00002205 NA coding downstream 358444 7156487 ~ 7157849 (+)
G121417 NA non-coding upstream 465495 6327197 ~ 6327481 (+)
G121402 NA non-coding upstream 515076 6277518 ~ 6277900 (+)
G121228 NA non-coding upstream 1222729 5474136 ~ 5570247 (+)
G121198 NA non-coding upstream 1517053 5243709 ~ 5275923 (+)
G121187 NA non-coding upstream 1564877 5227674 ~ 5228099 (+)
G121680 NA non-coding downstream 763023 7561066 ~ 7562732 (+)
G121688 ski,LOC106572818 non-coding downstream 848675 7646718 ~ 7648316 (+)
G121722 NA non-coding downstream 1031764 7829807 ~ 7834211 (+)
G121741 NA non-coding downstream 1112515 7910558 ~ 7917243 (+)
G121767 NA non-coding downstream 1147322 7945365 ~ 7953624 (+)
AMCG00002190 acot7 other upstream 190368 6586654 ~ 6602608 (+)
AMCG00002152 NA other upstream 1566320 5218830 ~ 5226656 (+)
AMCG00002098 NA other upstream 3250799 3533814 ~ 3542177 (+)
G120742 NA other upstream 3833501 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 3938849 2852154 ~ 2854127 (+)
AMCG00002215 NA other downstream 595757 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 1940728 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 3046162 9844205 ~ 9851312 (+)
AMCG00002294 rere other downstream 3769869 10567912 ~ 10604839 (+)
AMCG00002296 NA other downstream 3916756 10714799 ~ 10753893 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036735 NA non-coding NC_007119.7 CM002892.2 48546053 ~ 48548092 (-)
mexican tetra (Astyanax mexicanus) G57920 NA non-coding NC_035902.1 CM008305.1 40761495 ~ 40762172 (-)