G121689


Basic Information

Item Value
gene id G121689
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7561077 ~ 7562747 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU152525
TGTTCAAATACAATGCTGGATAACCTCAAGTGCCTGAAATTGGGCATAAGGTTTCCAGACTAGGGAAAAACGAAGTTGTCAAACTATTTTCCTTTGAGCAGGTTCTTGGCTTTGCCGGCCTCTAAGATGCCTCATATGATCTAGGGCCAGCTAGATGACGTCTAATTTGCCGTGTAAATTGTTTTGTAGATCAAGTGGCATCTTCTTCATACCCTCACTGTGCGTCTCCATTCAGTATTTGTGGGTCCTTCTGTGCTCCCTTACAAGATCAAGGCAGGTTCTGATAAACGAACCCTCTGCTAGGAATGAATATGATTATTGGTCTTTCCCTTTTTCATTTGGTggtttgtttaaacaaacactATAGGATGCTATAAAATTATTCATTCACTccccacaataaataaataaataaataaataaaagtattaccATATCTATGTTAAAACTAAAGTTTTGGCCTTATTATAGATATGGAAGCCCATCTCTTATCAAATGTGGAGCTTCAAAAACAATCAAGAGGGCATTAAATCAAGTTCAAGTAGCGTTTCTTTCACAGCGGTGCATCTTGGCGGCTCAGGAggtgtttattttctgcattctTGTAGTTGCACAGAAGAATGAAATGGGTGTTAAAAGGTTTTAGTCGTTCATTTAcactaaaatgaaacattacatttagtttcctttactaaagttttttttgttccagaAGAAAGGGAGAAGAGGTGATGATGGGCTCTTGACTCTCCCAttttcaaaactattttgtttgtatgtttagtTAATTCATtactctctacacacacacaaatactcaAATACGTTTTCTAAATGGAAGACAAGACAAGAGCAATAACAGTGAATATTAACAGATATTTCTTCACAAACAAAGCTAGccagtgtaaaaaaatattataaaataaaaaaaaatacaaatttacacatgtaaataatttttcattttacactattgtattataaatgtatatggtgTTTACTTTTTTCAAAAAAGAAATCTTTTCTTACACAATAGCTGTCTTGTTTTATGAGTTGTGTTTTAACATagagaaaatgtttcaaaaacaattattgcaGTGCGTTAGTGGATATTCCCTacataatcatgtttttttttttttttccattattttacttatttttttcactgtagaatctttttattatatgattctttttttttttcaccagaccatatattttttaatgttataagAAATTCCTGAAATAAAGTACATTTGGTCAAAAATGGTCACACAACAgtttcaaaaaatgaaaagtacaaACACCTCACCACAGATCATTTCTCATTATCATATACCTTTTAGCCCTACGCTGCTGCTATTAGTATATAAACTTTCCGATTCTAGAACTATTTTTATGTAAGAGATAAATGTATGCTTTCTTGTTTATTAATGCCGCAAATACGAAAAAAGCTTGgcttatttatctattttgcCCTTTACCTTGTCTTCTTTGCGCCTTTTCCACCCCCTTccccaccacctcccccccCTCTGTCACGACACAGactatattgtaaaataaaggaCTTTATGAGATTATGTTTGAAAATAGCTATGCTTATATACCACAGTGACTGAATGTACAGTGTATAGATGCATTACCAGAAATAAAGTTGTTTGTCCa

Function

GO:

id name namespace
GO:0071310 cellular response to organic substance biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0042221 response to chemical biological_process
GO:0044344 cellular response to fibroblast growth factor stimulus biological_process
GO:0071774 response to fibroblast growth factor biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152525 True 1671 lncRNA 0.33 1 7561077 7562747

Neighbor

gene id symbol gene type direction distance location
AMCG00002212 NA coding downstream 348113 7210266 ~ 7212964 (-)
AMCG00002210 clcn6 coding downstream 383093 7165097 ~ 7177984 (-)
AMCG00002209 NA coding downstream 451896 7090840 ~ 7109181 (-)
AMCG00002208 mfn2,LOC107748965 coding downstream 474664 7075749 ~ 7086413 (-)
AMCG00002201 prdm16 coding downstream 621532 6923998 ~ 6939545 (-)
AMCG00002219 ski coding upstream 2652 7565399 ~ 7582098 (-)
AMCG00002218 ski,LOC106572818 coding upstream 83908 7646655 ~ 7647629 (-)
AMCG00002221 prkcz,LOC106572815 coding upstream 129213 7691960 ~ 7719401 (-)
AMCG00002220 prkcz coding upstream 233976 7796723 ~ 7800503 (-)
AMCG00002222 NA coding upstream 257765 7820512 ~ 7826557 (-)
G121447 NA non-coding downstream 1136779 6420041 ~ 6424298 (-)
G121445 chd5,LOC107737210,LOC107691315 non-coding downstream 1147803 6413013 ~ 6413274 (-)
G121444 NA non-coding downstream 1153162 6407705 ~ 6407915 (-)
G121443 rpl22,LOC107737574,LOC107703077,LOC103047485,LOC107593380,LOC108414460 non-coding downstream 1175158 6382433 ~ 6385919 (-)
G121403 NA non-coding downstream 1283175 6277468 ~ 6277902 (-)
G121716 NA non-coding upstream 95085 7657832 ~ 7658851 (-)
G121718 NA non-coding upstream 100239 7662986 ~ 7663677 (-)
G121754 NA non-coding upstream 267446 7830193 ~ 7845316 (-)
G121789 NA non-coding upstream 453317 8016064 ~ 8017075 (-)
G121875 NA non-coding upstream 1262684 8825431 ~ 8859003 (-)
AMCG00002167 NA other downstream 1545684 5975725 ~ 6015393 (-)
G120993 NA other downstream 3341200 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 3774533 3784236 ~ 3786544 (-)
G120907 NA other downstream 3844825 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 4094616 3407485 ~ 3466461 (-)
AMCG00002223 NA other upstream 263894 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 2046003 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 2194678 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 2267772 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 2274171 9836918 ~ 9853075 (-)

Expression


Co-expression Network