G121754


Basic Information

Item Value
gene id G121754
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7830193 ~ 7845316 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU152604
agtattagtatggtgttcctaataatcctttagACTGTAACAGAATGAAGAGCTCAAATAATcgagagagatgtattttcaatcaaGAGGAATTTATTACAAAGGAAGATgtgttcaagaggcaatctcaagaacagtcttagagaagttacaaagtaaaggcacttttatgcagaccggacaggagagaaagatcaCAATGCCCACGTCTGTCCCATGATGAGTGGAAGTTcggaagacccatatatagttAAAACAAGGGATTAAAATGAGGGCATATGTAATGTTGAATATTAGGGGGGCTTGTTGGATGTATCAAGCCCAGTTTGCTGGTGAAACCTGGTTCTTATCTGACTCTTCTAAgaatcagggttgaactataacacagtgagacagtgagacagtgaccttgttcacacagacacacagggaaaaacatccagttcTTCACAgaatatttaactttaatattttatttgttcctgTTCCCTAAactatttgcttattttattaatttgactttttcatATCAATCGCTCATGTGGAAACCTTATCCATTATAAAccttgcattttttatatattaacaataaatatagaATTGTTATCCTAAAAATCTAGTAATGGATGTGAAAAATGCACTAAAAAATTATAGCTTTCAAAAACGTACTTACTAGTAGAGAACAATGTTTTgcagctgaaaacaaacaatagcaatGGAGTTTGATATTCAAAGCTCTCACTGAATGTGTAAACTAgtttacagacacacacccctATTTAGCTATCAACAACGTTATATTTTGTTGAAACAATAtcaaacactttaaatacatactttgCTGAACAGGAATATCATACtgcttaaaaataactgaaattgtGGAGATGTGTAGTCTAgtatacaatgttaaaaaaaggtttttgcTTATAAACGTATCACCCTAGAGGTCAGTTTACTACTGGTACACCAGAATGACTGAACTACAATAAAATCCTTATCTTCCTGTACAAACTAGAACTATTTCAGTTCTCTAAGCCCAGAATAAAGGGAAGAGCATTAGAGGTTTTCGCTGACTTCTGTTGGTGCAATTGTGAGATTTACATCAGAAGCTGTTCACAGTTGAAATggagttatatataaataaatatactctaTGAATGCTACTGCATGGAGTACACAACTTAAACCCAGTGATAATCAAAGTGACTTCCAAAAGCTATAAACATCCAGGtgtcataatattaataaattaactaaCAAGCATAGCAGGATTATAATTACAGGACTTATTTTCAACATAAGTTAATCAAATATGCCACAAACTGAAAGCTGCATACAGAATGGTCCTGTGGTTAGTACGGAGCACTGTACTAAATTAGTGCAGTCTTAACACCAATGGCAACACTGGCTACTGGTATTAGTCCCCAGCTCTATACTAAAATGTTATCGATTGCAATGAACTCCCtgtgatcattatttttattatccaTCACCAgttcaataaatattattctatgaatgtgtttatttaaattgtattttatttgtagtaaatacattatattgaatCTACCAATAGGGCCTAtttgtgggtggggtggggtgagaGACAAGCTGCagttattgctttgttttctctacaaaataaataaagcaacatCAATTTAACCCTCAATTGAttatttcttgttattatttatgaacAACAATTAAGTAATATAACGTTATACGGCTCTGGCTTTCCTGATTTCAATATTCATATGAGCTAGATGTGTGTATGGAGAATACTGTTGTATAAACGcattatcaaattaaatctgaaaagtTTGTACTGGAATTAGTGTCGGATTAACTACTAGGTGATGAAATTCAtgaaaatatcaatatcaatcaATATCAAATGCTTGGATTTAGAGAGGTGGTCTATGAAGGATCTGTAACACCTGCAAATTACATCAATGTATAACAATAGGTCAAGATCATATTTGCAGATGTGTGGGGTCTGCACAACAGCCTCAGGGTGCAGACAGCAGGATGAGAAGAAGTCCATCAGGTCCACAGCCAGAAGCTGCAGCTGAACCTCCAGCTCCATCTTGGCACCAGCTGCGAAACGTCtgccagtggtaggaatacagagacctcgtagagggagctctcgccaactgaatagtgTCTACTACCgtgtccgacagaccccaggcaatcaaacacTGCTGCTCAGTCCTCAGGAACATCCACGTGAGTTTTTGGGTCATGACCCCAGGACCCCAGATTATACCCATAGTATAATTCTGTGAGACAGCTGCAAAAGTTCTTAAACAGTGCTACTGGCTGTGGCCTTCTCTCTGGCGGGGGCCCCTCGTCAGCCCTCGGGGTGTGGATGCACCGTCAGCCCTCCGTGGTGGGGTACCTCATCTGCCCTCTGGGATGGGTGGTGCCTCGTCAGCCTTCCCGGGTGGAGGACAAGGTGCCTGATCAGACCCCCAGGgggctattgctggaagacaaagaTAAAATTGTGCTCAGCTGCTGATCATAAAATGCAGGTGATGACAGAATACATTGTACATAGCATGTCCATAGCACACCGATGGCACTATGGGTTACAGTGACTAGAAAATCAGACTAAAAGGAATAGTCATCTTCAGCCTTGATTTAAAGGCTGAGATAGAGGTGGCATCTCTTACATAGGCCGGAAGTTCGTTCTATAGTCTCGGGGTCATATAGCTAAATGCTCTAacacctgcggttttcttgtgtatttttggaCCACTAAataaccggcttcctgggatTTCAATTCCCAACCTGGAGTGTTATTGAAATGATAAAATGGACATTTGGCCCCGTCTGACAAACATCTTCTCTTCatcaaaaaatgataaaattatCTTGTAAGTATGGAGgggccagtccctttagtgctttaaataataagagaacttttaaatatatcctGCAGCGCACAGGGAGCCAGTGAACAGAAGcgaatactggagtgatgtgttcatgttttttgttttagttaagatccttgcagcagcattttgaactTAACTGTAGTGCAACTAACTGTCTTaatttagcaatgtttctaagatggaggaaggaagatcaaCACATTCTGAGTGGATAAAAGGATGGGTTATGGTcgcagatgacacccaggttcaGCGCTATCTCCTTAGGGATAAAATTGAAgctatcattactcagtttagTCAGTGAATGATGAACATTTAGATTTCTGTCCCCTAAAATGAGGACTTGTCATATCAGAGATATGCATAAGGACATTTCTTATCCAAGTTATAATCTCAGACAGAAAGCTGATTTGTGATTGTATGGCTATATTACTGTTCGGATTCACTGACcaatataattgtgtattgtcggcgtaactgtgaaagttaacaTTAAATCGTCAAATAATATAGTAATGTTTAAGTGAATTAGGGTCAGCATGAGATTGATTAAGAAGTGCTTCAATTACAGTCGTTTTAAAGGATTCaagaacagatcctgaggatacaACAGAGTAGTACATTTATTAGTAGCAGGAGGGTCTAGGATGTAATAAGGCATCGGTCAGAAatcgtctggttttggggtgatattaaGTTATGGATCTCTATcccacgggtaataactagatcaAGTGCGTCACTGTGATGATGTGTGGGTCCTGACCTGGGGGGCATTTAACAGATGTTGCTGGTgacacaatctttatatttctaactaTGAAGTCTTCAATAAAGAGCACCTTGTCGGCATACCTGCTGCTGGGGGGTTCAAATCGGATTGCGGTCCGAATGGGATACTGGAGCTCTAGCTTTGGATATCATGATTCTAGAGCCTGTTTTGACCGAGACGCTGGGATCTTCATGCTGTGGTTATAGAGCCACCGGTGTGGGCTTCTCACTAGGTACAGTAGGGCCAGGAGAATTTATTCAATCCAAATCTGGGTTTGTACAGTCTTTCATCTTTCTGAGAGTAAGTACGTGCTCCTCCAGTAAGCGTACTGCACCCGCCAACTCTTTATTAGTTAGGCATCTTGTGCAAGTAAAGTTTATCATTATGGTCATCgg

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0031399 regulation of protein modification process biological_process
GO:0031400 negative regulation of protein modification process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152604 True 4094 lncRNA 0.39 2 7830193 7845316

Neighbor

gene id symbol gene type direction distance location
AMCG00002222 NA coding downstream 3636 7820512 ~ 7826557 (-)
AMCG00002220 prkcz coding downstream 29690 7796723 ~ 7800503 (-)
AMCG00002221 prkcz,LOC106572815 coding downstream 110792 7691960 ~ 7719401 (-)
AMCG00002218 ski,LOC106572818 coding downstream 182564 7646655 ~ 7647629 (-)
AMCG00002219 ski coding downstream 248095 7565399 ~ 7582098 (-)
AMCG00002225 NA coding upstream 1022 7846338 ~ 7856519 (-)
AMCG00002230 NA coding upstream 25578 7870894 ~ 7871496 (-)
AMCG00002228 NA coding upstream 42996 7888312 ~ 7901666 (-)
AMCG00002229 NA coding upstream 61719 7907035 ~ 7907578 (-)
AMCG00002227 mad2l2 coding upstream 93144 7938460 ~ 7945017 (-)
G121718 NA non-coding downstream 166516 7662986 ~ 7663677 (-)
G121716 NA non-coding downstream 171342 7657832 ~ 7658851 (-)
G121689 NA non-coding downstream 267446 7561077 ~ 7562747 (-)
G121447 NA non-coding downstream 1405895 6420041 ~ 6424298 (-)
G121445 chd5,LOC107737210,LOC107691315 non-coding downstream 1416919 6413013 ~ 6413274 (-)
G121789 NA non-coding upstream 170748 8016064 ~ 8017075 (-)
G121875 NA non-coding upstream 980115 8825431 ~ 8859003 (-)
G121885 NA non-coding upstream 1023329 8868645 ~ 8870698 (-)
G121912 NA non-coding upstream 1086847 8932163 ~ 8933163 (-)
G121935 NA non-coding upstream 1172810 9018126 ~ 9018327 (-)
AMCG00002167 NA other downstream 1814800 5975725 ~ 6015393 (-)
G120993 NA other downstream 3610316 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 4043649 3784236 ~ 3786544 (-)
G120907 NA other downstream 4113941 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 4363732 3407485 ~ 3466461 (-)
AMCG00002265 NA other upstream 1763434 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 1912109 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 1985203 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 1991602 9836918 ~ 9853075 (-)
AMCG00002288 NA other upstream 2424573 10269889 ~ 10279984 (-)

Expression


Co-expression Network