G122131


Basic Information

Item Value
gene id G122131
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9848235 ~ 9851376 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU153141
attctgaactgtgatctACCCTAAAGTaagcaagaaaaatatattttgacaagGACAACACTCAGGTAGTTAAAGGGAGATATGTTTATTGACTGTCACAAGGAAAAAGACACCCAAGAAAAGATCTTGGGTGCTGGTAAACAGTATGGtctaaacaattttattttacactgtacagaagcaacagcaaaacaaacaacagtaaTACTGAGGATTTATTGTGacatacaaaataagtatttaggTTACTCCATCGATACTACTTTTTCAGTGGTGTGTCATTTGGAAGCAGTTAATATAGTTATTCAGTAACAGTcattttgtaaacaaacaaagcacTCGGCTAAAATACTATTGTAATAAAAGGTTAGATCTGTATAAATACAAGTAGTTTTGGTCCTCAATAAAGTCAGTGCTATACATTTGATCTTTATCgtcccaaaaaaagaaaacaaaaatacaaaatgtgttatttcaaaatacttttagaCTCTTGAATAGTAGAAAACCTGCAAGTGTATGCTATGTATTTTATCTGTAAGTTTAAAGAAGACTGAACTggaatgcttttttgttttctggaatgTAGAGTGCCCAGGGAGGAAATTGTCAGTCTTTACCATATTGTGTGGCAGTGGAGAGATTATTTTAAGGGCATTGGTGTGTCTTGCCGTATAtagataaaaaaacataaaaacagtagGTTTACCTTGAACAATTCCTGAGATATGATTCAATAGAATTCATCAGGTTTTATAGAAACTCACTATTTTCCATTCAAGTTTCAAAGTGAATCATAATTTCTATGCTACATAGAAAACTGAGAAAGGAATATTTTGAGAGACACGAGCACACCTGCAAGATGCCCATCTCAGTTCTTCTACCTCAACTTCATGTGCAGAGATCATTTACCAGGAGTAAGTTATCAGCTGTGCAGTGGTGACAGTAGCTAAACTGAAATGCTGTTTGGCAATTGAAATAAAACGTAAGATATTCCCCAGAGCTCAACTCGTGGAAGCACCGTTATCTTAATTTGTCACAACAAACCACTCTCATGAAATCAAACTTCAGGCGTGAGACTGAGGGAACACATGCACATTGTGTCCTATCAGCATGGCGGTTTCATGATAAGAATGCCTGGGCGTTCCTTTGATTTAAGTCTAAAAGGAGGCACGTTTTGCGATTGCATTTAGGCACCAACCTACTGCACTTTCCTTCTAGTCTGCAGCTGCTGTATAATATCTACAGAATACAAAACAGCCACTTGGTTGAACCCCTTCCAGAAGTCTCTCTGTTTTTGTGGCTTGAAAGATGCATCTTAGGATCTGACTTAAATCTAAGGCAGTCTGTATTGCAGAATGGGTGAATAATTAATAGCTGGCGTGCATCTTGTCAAGCCGCTCTGCTGAGGAGCCGTGCCGTTCTCTAGCTCGGTGATCACAGGTGGAATTTTCCAGCCTGCCCTGGTTGCTAGGGGGTTGCCATGGAGAGAAGGCTCACAGTATGATGGGGCTGTGATGCGGTGAGAGGTCAGATGTGCGGTCAGATGTGCCAGAGACAGGAGCAGCTGCTGACGGGCTCAAGGCAAACCCCAGTCCTGGAGCGCAGGTTCAACACTGACCAGGGATACAGCTGATTAACAGCCCAGAAACCCCCCATGGCCATGAAAAACCCTGAAAGGGAAATCAATAAAAGCCATTTGAAAGCTGAGCCTACCCATATTTTTGACATAATATGTAtcaactgctttaaaaaattgAACGTGTattacagatttttatttttaactaggcTTTATATAGGatgtgaaaaaaacagcacatcaTATATTACTAATTATTAGGAGAAATGTGACATTTAACACATGAATTGTAGACAATTGGCTGTTAATATAATTAGACttgaatatactgtatatgttgaAACTACCAATTATATTTAATCCCATTTTACAGTTCAATAGATCAGTTCAAAATAggttaaaaattaataaatacataagttgAATTTAATGCACACTTTACCTGTAGCCAGCATACTACCCACTGATAGCATTAAGGATAGGTAGTATAGTTCAGGAGTTGTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153141 True 2089 lncRNA 0.38 2 9848235 9851376

Neighbor

gene id symbol gene type direction distance location
AMCG00002277 NA coding downstream 40937 9802308 ~ 9807298 (-)
AMCG00002268 NA coding downstream 122969 9693760 ~ 9725266 (-)
AMCG00002269 kif1b coding downstream 155260 9661508 ~ 9692975 (-)
AMCG00002270 pgd,LOC107716232,LOC107681986 coding downstream 197625 9643246 ~ 9650610 (-)
AMCG00002267 NA coding downstream 210969 9630130 ~ 9637266 (-)
AMCG00002280 NA coding upstream 126400 9977776 ~ 10006571 (-)
AMCG00002286 NA coding upstream 173043 10024419 ~ 10030406 (-)
AMCG00002285 NA coding upstream 215536 10066912 ~ 10076666 (-)
AMCG00002283 slc25a33,LOC107708828 coding upstream 227781 10079157 ~ 10093103 (-)
AMCG00002282 spsb1,LOC107716103,LOC107687410,LOC107703063,LOC107591103,LOC107737563,LOC103042472 coding upstream 338387 10189763 ~ 10197544 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding downstream 226763 9621028 ~ 9621472 (-)
G122037 NA non-coding downstream 560648 9283969 ~ 9287587 (-)
G122019 NA non-coding downstream 634806 9138447 ~ 9213429 (-)
G121935 NA non-coding downstream 829908 9018126 ~ 9018327 (-)
G121912 NA non-coding downstream 915072 8932163 ~ 8933163 (-)
G122226 NA non-coding upstream 371837 10223213 ~ 10224982 (-)
G122302 NA non-coding upstream 899035 10750411 ~ 10750781 (-)
G122319 NA non-coding upstream 960810 10812186 ~ 10813876 (-)
G122376 NA non-coding upstream 1416188 11267564 ~ 11274527 (-)
G122432 NA non-coding upstream 1556148 11407524 ~ 11409586 (-)
AMCG00002276 NA other downstream 15011 9830519 ~ 9833224 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other downstream 47127 9757425 ~ 9801108 (-)
AMCG00002265 NA other downstream 228108 9608750 ~ 9620127 (-)
AMCG00002223 NA other downstream 2008824 7826641 ~ 7839411 (-)
AMCG00002167 NA other downstream 3832842 5975725 ~ 6015393 (-)
AMCG00002288 NA other upstream 418513 10269889 ~ 10279984 (-)
AMCG00002301 NA other upstream 986428 10837804 ~ 10847201 (-)
AMCG00002317 plekhm2 other upstream 1662624 11514000 ~ 11527918 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 1796535 11647911 ~ 11685089 (-)
G122597 NA other upstream 1880241 11731617 ~ 11734324 (-)

Expression


Co-expression Network