G122319


Basic Information

Item Value
gene id G122319
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10812186 ~ 10813876 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU153380
TTGAAAAAcacctttatttcattttatacagcagtgtgtattgctttttttttttttaaaccgtaGTGCAAAATTCAGTAAAAGATTCCACATAAATATGCTCAACATAAgttccatttaaataaacagtacacTTCACACAGAATAACAGTTATAacttaaaaagacacatttacaTCAACACCAAGCAATCGTTTCGggagttttttaatttttttctttcttccaaagTAAAAGGCTGAAGTCTGGCATTGCACTGCGTTCTTTCCAAGGTGCAGTCTTACcctgaataataaaaacatacactgaaacacagtgATTGAGGTGATTCTCATAccaaaaacaatgaatgaaaaaaagaaaaaaatgacatcaTCTTTGTCAGGCAAGCCTGTGGAATATCATACTCAATGCtgttacaatttacatttattttttatttttttttagataaagGAAAtccttaaaaaaggaaaatgtaactTCTTAGAAGCTTACAGTCATACCAGACGCTATATTATATCTCtactttaaaactgaatttgagTCGTGATGCATTTGTGAAAAATCCTGCACAACCCAGAACAAATAGTCTCTTGTCAGTTATTCACAGCTGAACAGACTCACTGGGAAGTGAGTGAAGAAATTCCTGCCAGTCTGGTTTTCCAAAGATCGGAAGGGGTAGATTTTCAGGTGAAATAAGACAGTTGTGGCTAATTTACACAAGcagcatatttgttttcattttctattgaaataaaaaagaaaaaaaatcagaaaaactTTTGCAAAAAACAGTATCTCCAGGGTGGGGCTGTGAAACAATTTTATCGATTGGCAATAAGGtaattttgatacattttctgtcattttaaaataattcatatcTATCACCCATTTATCTTTGCGGTTTGCTATTGCGTCATGTCAAAGTGTCCTGTGCAGAAACCTCCCCTCCCAACAATCCTTACACGCCTTCAAAAGCATTGATATGTGCAGGTAATAAATAATACTTCGATATGTACTTTTTCAGACCtgaatcaaattatatatatgtgtctgtgtacacatatatacatacatacatacaggtaCACAgtattaagacattttaaatatattttctttaacattCATACTTTATAATGACCTATATGTTCTCCGAAACAACGTTCAAACAGCTTGGCTTCCTTACATTCACATAAATAGGATTTATCAGAGAATACTGTAGTGTTCCCCTCTCCGTCGTGGTGCACTATGCAAATTTATATATGTTAAACAGTATTAACGGCACACAGTGGTCCTTTAACGTACTGTGAACCGTGTTATGAGTCCCTGTTTCTGGTATTTGGtgaaggaaattatatatagtgGGATGCAAGAGCTGGAAAGatttaatcttgttttaatgGCTATTCAAATCGTCCTGGCAGGCTGGGGTTCAGTAGCCCCTTTGAGCAAGGCCTGGGGAAGAGTTCATCATTCTGCATTGTTaaacctgtgtgtttgtgtgtatgtgtgtgtcagactAGAGCTGTGTCAGTCTTACTTAAAAACAGGACTTGACTGCAATGCTGCACAGTTGCATGCAGCTTCCCTGTGTTACAGTAAACCACAATGTCAAATATCACCATCTACTGTGGCTTAGCAGCACTGCAGCCTAGAATTTTGCCCAGAAGACAAAATATCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153380 True 1691 lncRNA 0.35 1 10812186 10813876

Neighbor

gene id symbol gene type direction distance location
AMCG00002302 NA coding downstream 22231 10755832 ~ 10789955 (-)
AMCG00002292 NA coding downstream 408306 10391726 ~ 10403880 (-)
AMCG00002284 NA coding downstream 567401 10240092 ~ 10244785 (-)
AMCG00002281 NA coding downstream 572653 10225288 ~ 10239533 (-)
AMCG00002282 spsb1,LOC107716103,LOC107687410,LOC107703063,LOC107591103,LOC107737563,LOC103042472 coding downstream 614642 10189763 ~ 10197544 (-)
AMCG00002303 NA coding upstream 112992 10926868 ~ 10929003 (-)
AMCG00002313 NA coding upstream 464550 11278426 ~ 11279133 (-)
AMCG00002312 NA coding upstream 479218 11293094 ~ 11304845 (-)
AMCG00002315 NA coding upstream 645187 11459063 ~ 11467699 (-)
AMCG00002319 NA coding upstream 670883 11484759 ~ 11505246 (-)
G122302 NA non-coding downstream 61405 10750411 ~ 10750781 (-)
G122226 NA non-coding downstream 587204 10223213 ~ 10224982 (-)
G122131 NA non-coding downstream 960810 9848235 ~ 9851376 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding downstream 1190714 9621028 ~ 9621472 (-)
G122037 NA non-coding downstream 1524599 9283969 ~ 9287587 (-)
G122376 NA non-coding upstream 453688 11267564 ~ 11274527 (-)
G122432 NA non-coding upstream 593648 11407524 ~ 11409586 (-)
G122438 NA non-coding upstream 635690 11449566 ~ 11449791 (-)
G122530 NA non-coding upstream 788096 11601972 ~ 11628435 (-)
G122548 NA non-coding upstream 900533 11714409 ~ 11716145 (-)
AMCG00002288 NA other downstream 532202 10269889 ~ 10279984 (-)
AMCG00002279 NA other downstream 959111 9836918 ~ 9853075 (-)
AMCG00002276 NA other downstream 978962 9830519 ~ 9833224 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other downstream 1011078 9757425 ~ 9801108 (-)
AMCG00002265 NA other downstream 1192059 9608750 ~ 9620127 (-)
AMCG00002301 NA other upstream 23928 10837804 ~ 10847201 (-)
AMCG00002317 plekhm2 other upstream 700124 11514000 ~ 11527918 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 834035 11647911 ~ 11685089 (-)
G122597 NA other upstream 917741 11731617 ~ 11734324 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 1034594 11848470 ~ 11854891 (-)

Expression


Co-expression Network