G122328 (her9,LOC107687478,LOC107716081,LOC107593950,LOC107703052,LOC107737700,LOC107591146)


Basic Information

Item Value
gene id G122328
gene name her9,LOC107687478,LOC107716081,LOC107593950,LOC107703052,LOC107737700,LOC107591146
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10870773 ~ 10927943 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU153390
tgttttttttttggatttcaattgtttttattatttaaaaatccttCGCATGAAGGAGTCTGTCCAGCACATAActagtaaacaaataaaacaaaagctttgGCATTGAACAACCATTTTCACAGGTTTATACAAAACTATATGtctttccagaaaaaaaacacttttgatataatttttttttttttttttttttaatatcgtTTTCACAAAGAGTGAATATCATATATACAGGTATATCATCCCAAATTTTGGAAatcagacaataaataataaactcttAAAAGTCCAACAGAAGAGCAAGTGTTCCTTAAAACGGAACggcttttttctttattcagaTGTTAGAAAAAGAATagttaagtgtttttttcatcGGGTTtatatttagatgtatttttccATAAACCCCCCACGTCTACCACGGCCTCCAGACTGACTCACTGTCCGAGCCTGCGCTGACACTCAGCGGGCTGACAGCCTGCGAGACCCCGGGGAAAGAAGTCATTCCCTGCACCGGAGAGGAGACGGGGGGCGCAGAGGTGGCGTGGATGGGGCTGGAGTTGACGGTAACCGGCAAGTTAGTGTTGGCGTACAGGGGGATAACcggggtggtggaggaggcgaAGGCCGGGTTGGGTATGAGGAAGGCGAACTGTCCGTCAGTAGCGGGCACTAGCTGGAAGCCCCCATAGACCTTTGGCGACACCGCCTCGGCGGGGCTCAGTTTGCACGGCATGGAAACTCCATTGATGGGCACGGTGCCGGCCGCCGACGGGAGCTGGACGTGCAGTGGCTGGCCGAGGTGGGCCGCCTGCTGGGCGCTGGGGGGCTGCGGGTAGTTCATCGCGATCATCTGCCCTAGACACCCGGAGAGGTGGTTCAAGAGTCGGGACCGGACCTCGGTGTTCACCCCCTCGCAGGTGGAGAGGAAACGGGTCACCTCGTTCATGCACTCGTTAAATCCCGCCCGGTACTTGCCCAGGACTGTGGGGTCTGCCGTCAGGGCTG

Function

symbol description
her9 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within negative regulation of neurogenesis. Predicted to be active in nucleus. Is expressed in several structures, including axis; central nervous system; neural plate; presumptive hypochord; and pronephros. Orthologous to human HES4 (hes family bHLH transcription factor 4).

NR:

description
PREDICTED: transcription factor HES-4-B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153390 True 1011 lncRNA 0.50 2 10870773 10927943

Neighbor

gene id symbol gene type direction distance location
AMCG00002300 NA coding upstream 35962 10820245 ~ 10834811 (+)
AMCG00002299 klhl17,LOC106572137,LOC107737556,LOC107572648,LOC107687417 coding upstream 56898 10790376 ~ 10813875 (+)
AMCG00002298 NA coding upstream 161464 10693063 ~ 10709309 (+)
AMCG00002297 samd11 coding upstream 200126 10667692 ~ 10670647 (+)
AMCG00002295 rere,rerea,LOC107591099 coding upstream 312309 10550667 ~ 10558464 (+)
AMCG00002304 agrn coding downstream 64566 10992509 ~ 10995711 (+)
AMCG00002305 NA coding downstream 169548 11097491 ~ 11102004 (+)
AMCG00002306 NA coding downstream 199516 11127459 ~ 11140687 (+)
AMCG00002308 NA coding downstream 216066 11144009 ~ 11202001 (+)
AMCG00002309 NA coding downstream 286141 11214084 ~ 11244980 (+)
G122236 NA non-coding upstream 544122 10323529 ~ 10326651 (+)
G122198 NA non-coding upstream 738573 10079747 ~ 10132200 (+)
G122126 ctnnbip1 non-coding upstream 971893 9862956 ~ 9898880 (+)
G122119 NA non-coding upstream 1040095 9829754 ~ 9830678 (+)
G122086 NA non-coding upstream 1111712 9693716 ~ 9759061 (+)
G122389 NA non-coding downstream 406988 11334931 ~ 11348638 (+)
G122417 NA non-coding downstream 529701 11457644 ~ 11470525 (+)
G122467 NA non-coding downstream 594231 11522174 ~ 11522631 (+)
G122468 NA non-coding downstream 594929 11522872 ~ 11523114 (+)
G122469 NA non-coding downstream 595284 11523227 ~ 11523622 (+)
AMCG00002296 NA other upstream 116880 10714799 ~ 10753893 (+)
AMCG00002294 rere other upstream 265934 10567912 ~ 10604839 (+)
AMCG00002272 NA other upstream 1019461 9844205 ~ 9851312 (+)
AMCG00002245 NA other upstream 2078295 8738771 ~ 8792478 (+)
AMCG00002215 NA other upstream 3459543 7393800 ~ 7411230 (+)
AMCG00002310 NA other downstream 429609 11357552 ~ 11359840 (+)
AMCG00002311 ttll10 other downstream 437671 11365614 ~ 11379568 (+)
G122482 NA other downstream 701069 11629012 ~ 11630892 (+)
AMCG00002331 NA other downstream 760657 11688600 ~ 11694165 (+)
AMCG00002339 NA other downstream 782507 11710450 ~ 11715372 (+)

Expression


Co-expression Network