G122376


Basic Information

Item Value
gene id G122376
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11267564 ~ 11274527 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU153446
tttgtttttccattttttctttaatatatatatatatatatatatatatttagattgtgTTATTCTCCGTTGTCAGATTAATTCATTACAAACAACTGCATTTGCCACAGTAGAGCGCAAGTTCGGGTTGCGCAAGTGCAACAGTAGAGATACTGTGTCGTGAAGGACAAAGTTGAGTGCCCCGAAAGTAGGGCACCGATATTAAAACaagaatgcaaaaaacaaaaacaaaaaaaacaacaacgttgcagcaaatggaaaacatgatagaaattattttataatgttcaaGTAAAattgaaggaaacaaacaaacgaaacaaaacaaaaaaattacagcTTCCGAAATGCTTGTTTTGGTTGCAGTTTCTACACagagtaaaatacatttcaagattaATGAGCAAATTGCGGCCGATCATTCAAAATAGATAATTAATTATACCAGACAATGTACATACAACAATTTGTAACCACCCAACCCCCccgaaaaaaaaacaaaaaaaaacagcttacaCAAAACgcaaaaaagaaatcaaacaaaaataaacataacaaaaattaTACGGACACATACAGCATACAGCTGGCAAACTAATCAAAGAACAATTTATAGCTGATATGGACATTCTGTCACAGATTACAGGATCAACAGTTCACAAACAAAATTTCAAGTATTGAAGTCTGAGAAGATAGTTTTTCAACACCGCCGCCACTCCTTCCCTCACATACACAgattacacactcacacacacaaatattttaaaggattGAACACtaagcattaaaacaaaaacccaacacTTTCTTCTACACTTTTCTTCTCTACATTTGCAGCAAAAGACGTAGCTATGAAGTGACTTGGCAGTAGTAAACACATACAAGTGCTCTATTAGGTTAACAGACTCCAGATGGACTTGGGCCCTCTTAACACACTGTCAGCCCCCTCCGCTTTCTTAGCTCAGTGAATTGAACTTTAGCATGCTTTATCTTTCCTCCCCCTAAATCACAGCCACCTACACAGACCAACAAAGAGGGCAACACAAACTTGACATCTGTAGTCTCACAGGCCCTCTACAATTAATCTGGATTCAAAAAATAAACGTAACGATAACCATAAATTCACTACTGTACCCAGATATGATACTGATGTCTAAAAGTCAAACACAGAAGCTCAGCTCGCAGCCCAGAGAAGAAACCAGAAAGGTGGCATTTAAGAAAGGAGAGTGTGGTTGTCTGAAGCgggcacacgcacacaaacgcATTCTCGACTTTCCCCAGGTAAGAATTTCTATAAGAAAAGTTGTGCTGATGTCTTCTTCCGTGCTGCCATTGAGTGCCCAGTCCCCATGTTTGACCAGGTAAATCGCTAACAGAACaccaatactactactattcaATAAAAAAGGTGCGAGTCAGGGTGGCATCAGCAATCGGCACATTTGACACCAGTCTCAATTCGTGGCCTCTCTGCTGCTCAGACAACAATCACCTTCGGAACagaactttttcttttctctttcttcttccttcttccaaaaacagaaacaaaaaacaagtgcaaTTTCTGCATTGCGCCAGCACTCATAAGCACATGACCTGAGGTTCTTCACGTCAGAGGTCTTTGGTTACAGTAGATGCATCCAGTATGTAGAGCAGTTCCAGAACATCGGCCTCACGCTTTGCTtcccatacatatatatatatagtatatgttaaatatttgtatatatatttatatatgatcaatacaactaaacaaaacaaacaaaaataaatcagtagcAGCCTTGTGGAGATCTGAGAAACAAACCACAAGCATCTGCTCCTTGCGCGCCTGCGGGTGTCGACCCATCTCACTGCTGAATACAGATCTCGCACACAGCCATTGTTTTTTGTCACGGACGTcgtcgctgctgctgctgtttcagaTTGTCTGCTGGGGGGCAGGGGCTGTGGTAGGGGTGGGACTGATAAGAGTTCAGTGGAAGAGGCACTTATTTCATGAATACAAGCTGAAGAGAGATCGAGAGAAaacgagagagaaaaagtgagcGACGGTGAGGAAAAATGAAGTCACGCTGGCGAGTGAAAGTCTTTCTTTCCTGTAGAGCGCGATGGCAGCTGGGcggtgcccccccacccccccgtgcCGCTGGCTGTGCCTGCATGTCGCCGTGCGTCTCAGGGGATCTTCACAGTCAGCTCCACTGAAAACTCATCTCCCTGCTCACAAATGTCTCGACTCCTGGAAGAGATGATGAAGGACTCCTGCCCCGGCCCCTATCTCCTGGTGTTGCTGATCCCGGCGGTCTTGGGGTGTCTGATGTTTAAGTTCTCGTACACGCCTGTGGAGTCGTCGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153446 True 2364 lncRNA 0.42 3 11267564 11274527

Neighbor

gene id symbol gene type direction distance location
AMCG00002303 NA coding downstream 338561 10926868 ~ 10929003 (-)
AMCG00002302 NA coding downstream 477609 10755832 ~ 10789955 (-)
AMCG00002292 NA coding downstream 863684 10391726 ~ 10403880 (-)
AMCG00002284 NA coding downstream 1022779 10240092 ~ 10244785 (-)
AMCG00002281 NA coding downstream 1028031 10225288 ~ 10239533 (-)
AMCG00002313 NA coding upstream 3899 11278426 ~ 11279133 (-)
AMCG00002312 NA coding upstream 18567 11293094 ~ 11304845 (-)
AMCG00002315 NA coding upstream 184536 11459063 ~ 11467699 (-)
AMCG00002319 NA coding upstream 210232 11484759 ~ 11505246 (-)
AMCG00002318 NA coding upstream 231348 11505875 ~ 11509991 (-)
G122319 NA non-coding downstream 453688 10812186 ~ 10813876 (-)
G122302 NA non-coding downstream 516783 10750411 ~ 10750781 (-)
G122226 NA non-coding downstream 1042582 10223213 ~ 10224982 (-)
G122131 NA non-coding downstream 1416188 9848235 ~ 9851376 (-)
G122061 tardbp,LOC107716231,LOC107586522 non-coding downstream 1646092 9621028 ~ 9621472 (-)
G122432 NA non-coding upstream 132997 11407524 ~ 11409586 (-)
G122438 NA non-coding upstream 175039 11449566 ~ 11449791 (-)
G122530 NA non-coding upstream 327445 11601972 ~ 11628435 (-)
G122548 NA non-coding upstream 439882 11714409 ~ 11716145 (-)
G122551 NA non-coding upstream 444003 11718530 ~ 11718969 (-)
AMCG00002301 NA other downstream 420363 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 987580 10269889 ~ 10279984 (-)
AMCG00002279 NA other downstream 1414489 9836918 ~ 9853075 (-)
AMCG00002276 NA other downstream 1434340 9830519 ~ 9833224 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other downstream 1466456 9757425 ~ 9801108 (-)
AMCG00002317 plekhm2 other upstream 239473 11514000 ~ 11527918 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 373384 11647911 ~ 11685089 (-)
G122597 NA other upstream 457090 11731617 ~ 11734324 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 573943 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 595080 11869607 ~ 11872862 (-)

Expression


Co-expression Network