G122417


Basic Information

Item Value
gene id G122417
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11457644 ~ 11470525 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU153499
CGCTGGTGGTTTATTATCCTGCACGTGGTCACAGGAAACATTCATATGAAACaaaactgtgtttattttcatttttatattctttaaaaaaaaaaagtgcaccgtaatatataaataaataaagtcgaattgtttatttttaatagttagACCACGTTCTGATACTTTTCTCACCTAAGGTTACCCATTACCTCATGCACAGCCAGAGAACAATTTCTATGTGGTGCATTTTTGCATGTTTCCTCTCTTATCGGTTCACAGATTATACTTCTTTCCTGCCGGTGACACATGTGGCAGATGTTTAACCCCAGCTGAGCCGACGTCCTGACgtatatcttttttttgtgaaatctGATATGTGAAATAAGTACAACAGAAGAAGGAAAAGTACACATTGCGTACATTTTTCTAAATCTGGTTCTGCTtctataataaacatttgaatgccGTTTTTGTATGGTGGATGAAGGGGTGCAAGGGGGCATCAATCGAGTTCATTTTTTTGTCAAGTGTCAGTGGAACACCGCGGAGCCTCTGTCATCAAGGTGAAAGTGTTACTTTTGGTAGGTTTTCTGTCTGATAAATCAAACTGAAAGCACGATCTGACTTGACGATACTGCCGTGCTGTTCTGGGGACGTCCACTAGAGGATGCAATCACAGGACACCCCCAGAAATCCAGAGAAGGCAGTGGAAAATGTACCTGAGGTTATTTACAGCAACATCATGCAGACTAGTGTAGGTTGTCAGGGATGTTGTAGGTTAGAGGAAAAGGATTTCAGATTTCAAAGGGTAACAGGTTAGTGTTTTCAGAAGCTAAGGTTGcgaatattgattttatttgcttatttttaagtGGTAAAACATTTACTAACTTACAATTTACACTCCGCTAAGAGCTACTTCAATAGCTGCATTCTATTTATATTAGAAATCTGTCTCATGGCGATCTGTCACCATTCCTAAGCTATAATTACAGTCCAGTTGCTTACTGCAGAGGTTTCATAAATAACAATGGGATCAATCTGTACCTCCAAAATCAGCCGATAAAGAGATCAATAGTACCTAATGGTCAGTCCAGCTATATTTCAGGCTccagggagggggggggcagccTGAACAGCGGCACTGATGCTGcaatatcaacaacaacaatatttataaccacaataatattacatttcacaatattaaAGTTTCTTGTGCCTTTTTGAATTTCAGTTCTTCAGTGTCAGCAATCTGTCCCGTTTTCCATAGAGGACACACAGCAGATCCCCGGGGGGGGCATTGCCACACAGAGCAAAGGGATCCAACCAAATGCCAAGGCATCACATCCAGGTGAAGCGTCTCTAGATCAGGAAAACACTCGGCACACCACTCGCCAACGGGCAGCACAGCCCCAGGCCAGTGCTGTGGAAAGCTGCCAGgatgtgtgggagtgtgtgagacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgagagtgtgtgtgt

Function

NR:

description
PREDICTED: CCR4-NOT transcription complex subunit 8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153499 True 1544 lncRNA 0.42 2 11457644 11470525

Neighbor

gene id symbol gene type direction distance location
AMCG00002314 NA coding upstream 51180 11392955 ~ 11406464 (+)
AMCG00002307 LOC105898973,LOC106572187,LOC103032744 coding upstream 186315 11255732 ~ 11271329 (+)
AMCG00002309 NA coding upstream 212664 11214084 ~ 11244980 (+)
AMCG00002308 NA coding upstream 255643 11144009 ~ 11202001 (+)
AMCG00002306 NA coding upstream 316957 11127459 ~ 11140687 (+)
AMCG00002316 NA coding downstream 94484 11565009 ~ 11587894 (+)
AMCG00002323 NA coding downstream 131685 11602210 ~ 11612235 (+)
AMCG00002325 NA coding downstream 153256 11623781 ~ 11628341 (+)
AMCG00002324 zbtb17 coding downstream 166288 11636813 ~ 11644784 (+)
AMCG00002329 NA coding downstream 261080 11731605 ~ 11738113 (+)
G122389 NA non-coding upstream 109006 11334931 ~ 11348638 (+)
G122328 her9,LOC107687478,LOC107716081,LOC107593950,LOC107703052,LOC107737700,LOC107591146 non-coding upstream 529701 10870773 ~ 10927943 (+)
G122236 NA non-coding upstream 1130993 10323529 ~ 10326651 (+)
G122198 NA non-coding upstream 1325444 10079747 ~ 10132200 (+)
G122126 ctnnbip1 non-coding upstream 1558764 9862956 ~ 9898880 (+)
G122467 NA non-coding downstream 51649 11522174 ~ 11522631 (+)
G122468 NA non-coding downstream 52347 11522872 ~ 11523114 (+)
G122469 NA non-coding downstream 52702 11523227 ~ 11523622 (+)
G122470 NA non-coding downstream 54707 11525232 ~ 11528098 (+)
G122471 NA non-coding downstream 60361 11530886 ~ 11533460 (+)
AMCG00002311 ttll10 other upstream 78076 11365614 ~ 11379568 (+)
AMCG00002310 NA other upstream 97804 11357552 ~ 11359840 (+)
AMCG00002296 NA other upstream 703751 10714799 ~ 10753893 (+)
AMCG00002294 rere other upstream 852805 10567912 ~ 10604839 (+)
AMCG00002272 NA other upstream 1606332 9844205 ~ 9851312 (+)
G122482 NA other downstream 158487 11629012 ~ 11630892 (+)
AMCG00002331 NA other downstream 218075 11688600 ~ 11694165 (+)
AMCG00002339 NA other downstream 239925 11710450 ~ 11715372 (+)
G122582 NA other downstream 364914 11835439 ~ 11836169 (+)
AMCG00002355 NA other downstream 423948 11894473 ~ 11898701 (+)

Expression


Co-expression Network