G122432


Basic Information

Item Value
gene id G122432
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11407524 ~ 11409586 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU153515
ATTCACAGACACAACTGAATTAATTAGGAAGACAGAATTAGAATACAACAACACAGAGGACCTGTTTTTTTGCCATTCTGTTGAGTTTTAATAGATTACAAAGCATGTCAGTCACATTGGTCTGAAAGATTGTCAACACAGAAGTATTCCTGCATTGGATTAATTCCTACATAGATCACAGTCActacatacaaacaaaagagCTTTCAAGAGATCCATCATCCTCAGTTCTATTGTTGATTCCATTGTATTCGATCTATATATTCTGTTGTACCATTGTACCTTGGCTTAGCTTCTGTAAATGTTATCTTATTTCAGAATGAATTCGATTTTTTATTGTGgctcttatttaaaaaaaagaaaaaacccacATGTAGGCATTCCCCTAATTCGCAATGAATAGGTCAGAAACAGCGCTCAGTTTTAAATCTcgtcagacagacacacacacgcagaaacacacaaactcacagagacatacacaaaggaaaataaaaaaaattgaaaaaaacacctAACCACACTGTGACCAGGAGAGAGATAGTTTGCCATCAGCAGGTGGGGACAGCCCCACGCCCAGCTCCCGGTAGACTTACTAAGATTATTCGCTGCAGGAATTAAGTACTCCTCTCCCAACAGGCTGCCAATGAAGTTACAGCTAGGGGCGCCCTGAATGACAAGCATCTTCTAAGCcacaaactgtaaaatacttttacgTACTGTTGTCTCTGCATCTGATTGATGAATGGCCaggttaattaagtaattataaaaGCCCCAGAAGACTCTACAGCCTCACCAGGAACTGTGTTTGAGTGCCCTGGGGTATATAGTGCAATCCCATCTGTGCTGCTCCCTGTGGTTAGTCTGAGAGGCTGCAAACCAGCATTCATGATTTCATCacactttttcaaataaaataatgtaaagaaagaacaaaagaaaaaacgccccatattaaaatgaacactacatatatatatatatatatatatatatttatatttatatatttgatttatctCAAGCCCAGCTTCCAATGAACATGAAAgcccaaaattaaaatattgtgatgTGTAGAGGAAACCAGAGCGTACCTGTtctgctatttttaaacttcctTTATATGAGCTCTTAAGTACCGGATGAAATTAGCAAATATTTCCACTGTATCAGACACTGAATCGTCCAACTAAATTGCAATGAAAACTCAGTGAAGGCTGTACACTTTGAGTCATAGGATCCTTTttatgcttttgaaaatatggagtttgttatttttctctctttttcttttactttcagCTTTCTctcgttttctttttctttcttgttttaaagGTCCATCCTGAGACACCCTTGGTCTTGTCTCTGGATGGGGCTCACCTGCCGggaactgcaaataaataaatacttttcctAGAAGCTCTGTCCCCAGGAGTGGGCACCACGGCAGCCATTTGGGCTGAGCTGTGATGCTGAACGGGTCCTGGTGTGCACGGTCCACCAAGGCTGTCGCTGTTCTGTGGCCACAATGTCACCAGCTTCTTGCAAGAGTCCTTTCTCTGTTTCTATGTTTCCAATGTCTCTCCAAATCTCCTCAGTGTAGTCTTCCTAGTACAGCCTCAATCCCAAGGAGTTCTTCCTAGTCAAGTTCAGTCTGACACATGTTAGGTCAgccttctttttatttattttttatttttttggtagttTTTTGTATAGTTTCAAATCAATCTGGGCTTGGGCCGGGGACAGGTGCGGAAGAGGCATCAGCCAGCTCAGATCCTTCTCTTCTTTGGAATGAGGGGCGGTGGCTCTTTGGAGATGGTGTTGAAGATTTCTTCGGGCTTTTGTTAGAAAAGTAAGAAGCAGTGGTTTACTTGTTGTGTATGCGCACACAGACTGACTACACAACCCACATTAATGGAAATTCCCAAGTCAATAAACAGAGGGGTGTCTGTTGCCAATACACTGAGTCTCTGCCTATCAGATACTGACTAAAGATTACCATGGTATTactcactgaaaacaaaaac

Function

GO:

id name namespace
GO:0050900 leukocyte migration biological_process
GO:0002376 immune system process biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU153515 True 2039 lncRNA 0.40 2 11407524 11409586

Neighbor

gene id symbol gene type direction distance location
AMCG00002312 NA coding downstream 102679 11293094 ~ 11304845 (-)
AMCG00002313 NA coding downstream 128391 11278426 ~ 11279133 (-)
AMCG00002303 NA coding downstream 478521 10926868 ~ 10929003 (-)
AMCG00002302 NA coding downstream 617569 10755832 ~ 10789955 (-)
AMCG00002292 NA coding downstream 1003644 10391726 ~ 10403880 (-)
AMCG00002315 NA coding upstream 49477 11459063 ~ 11467699 (-)
AMCG00002319 NA coding upstream 75173 11484759 ~ 11505246 (-)
AMCG00002318 NA coding upstream 96289 11505875 ~ 11509991 (-)
AMCG00002322 NA coding upstream 121692 11531278 ~ 11532015 (-)
AMCG00002321 LOC106582762 coding upstream 123964 11533550 ~ 11541279 (-)
G122376 NA non-coding downstream 132997 11267564 ~ 11274527 (-)
G122319 NA non-coding downstream 593648 10812186 ~ 10813876 (-)
G122302 NA non-coding downstream 656743 10750411 ~ 10750781 (-)
G122226 NA non-coding downstream 1182542 10223213 ~ 10224982 (-)
G122131 NA non-coding downstream 1556148 9848235 ~ 9851376 (-)
G122438 NA non-coding upstream 39980 11449566 ~ 11449791 (-)
G122530 NA non-coding upstream 192386 11601972 ~ 11628435 (-)
G122548 NA non-coding upstream 304823 11714409 ~ 11716145 (-)
G122551 NA non-coding upstream 308944 11718530 ~ 11718969 (-)
G122632 NA non-coding upstream 434806 11844392 ~ 11845671 (-)
AMCG00002301 NA other downstream 560323 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 1127540 10269889 ~ 10279984 (-)
AMCG00002279 NA other downstream 1554449 9836918 ~ 9853075 (-)
AMCG00002276 NA other downstream 1574300 9830519 ~ 9833224 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other downstream 1606416 9757425 ~ 9801108 (-)
AMCG00002317 plekhm2 other upstream 104414 11514000 ~ 11527918 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other upstream 238325 11647911 ~ 11685089 (-)
G122597 NA other upstream 322031 11731617 ~ 11734324 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 438884 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 460021 11869607 ~ 11872862 (-)

Expression


Co-expression Network