G122501


Basic Information

Item Value
gene id G122501
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11685432 ~ 11686318 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU153607
GGTGAGCGGCATACAGAGTAAAGGACAGCAGGATCGCACCCAGTCCCGTCTGGTTCCCATCAATATCATATCGCCATATTTCCCGGTGCGCATTCAGATGTATAGTTAAACCCTATACTGTCGGTGTTTTGAAGGGTGATCTCAATGCAAAACTGGACAGGGCAAAGAGAGACGGCGCAGGCGTCGAGCTCGGGCTCATACTGATGAAAGGTCAAACCGGCCACGTACACCGACCCGACGGGCTGCTCCACCTGGGCACGGGAAACACGGGGACATCCACGAACACGCACTGAGACGCAACATACACGTGTGTGCGGCGGAGGGGCGGCTGGAGGTGCCGATTCCTGCTCTGAGCGCAGAGGTGTCCCGGGGCTCAGGCGTGGGACTGGGCTCATGGTGGGGCGGTCAGACGCGGGACGGTACATGTTTAGTGCAACGTGTGATTTACCAAACGAGACAGGCTGCAGCTCAGCCAGAGCTTTCTTGCCTGCCAacataacattattaattattaatcataatagtGGCTAGATAAATCATTTTTGCAGATTCAGAAATGCAATAGACCCAGTCCTGAAGGTCTGAGGTGCATGTTAATCAGCTTCTGATTAAGACCTGGGCACCTCATTTAATTTCGTAATTAGAGTGATTGAAAGGTGGGCTTCTGTGAATGGCAGACTTTGTGACAAAACCACGCTTTGTGTTGtcctgttttattgtattatattttctgCTGTCCTGTTTTACTTTGCTGCTGTGTTCTTTTGTACTgtaggtttatatatatatatatataaagtgttgcaacatgtattttattacattgtgctgtactgtgctgtgttgcatTGCCATGTCTCCTT

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153607 True 863 lncRNA 0.48 2 11685432 11686318

Neighbor

gene id symbol gene type direction distance location
AMCG00002324 zbtb17 coding upstream 40648 11636813 ~ 11644784 (+)
AMCG00002325 NA coding upstream 57091 11623781 ~ 11628341 (+)
AMCG00002323 NA coding upstream 73197 11602210 ~ 11612235 (+)
AMCG00002316 NA coding upstream 97538 11565009 ~ 11587894 (+)
AMCG00002314 NA coding upstream 278968 11392955 ~ 11406464 (+)
AMCG00002329 NA coding downstream 45287 11731605 ~ 11738113 (+)
AMCG00002332 NA coding downstream 52006 11738324 ~ 11741047 (+)
AMCG00002330 NA coding downstream 65333 11751651 ~ 11766591 (+)
AMCG00002343 NA coding downstream 105096 11791414 ~ 11792870 (+)
AMCG00002340 NA coding downstream 107302 11793620 ~ 11797734 (+)
G122478 NA non-coding upstream 141811 11543104 ~ 11543621 (+)
G122471 NA non-coding upstream 151972 11530886 ~ 11533460 (+)
G122470 NA non-coding upstream 157334 11525232 ~ 11528098 (+)
G122469 NA non-coding upstream 161810 11523227 ~ 11523622 (+)
G122468 NA non-coding upstream 162318 11522872 ~ 11523114 (+)
G122549 NA non-coding downstream 30037 11716355 ~ 11716701 (+)
G122592 NA non-coding downstream 170160 11856478 ~ 11857326 (+)
G122737 NA non-coding downstream 418352 12104670 ~ 12105523 (+)
G122743 NA non-coding downstream 442062 12128380 ~ 12129678 (+)
G122744 NA non-coding downstream 443560 12129878 ~ 12130747 (+)
G122482 NA other upstream 54540 11629012 ~ 11630892 (+)
AMCG00002311 ttll10 other upstream 305864 11365614 ~ 11379568 (+)
AMCG00002310 NA other upstream 325592 11357552 ~ 11359840 (+)
AMCG00002296 NA other upstream 931539 10714799 ~ 10753893 (+)
AMCG00002294 rere other upstream 1080593 10567912 ~ 10604839 (+)
AMCG00002331 NA other downstream 2282 11688600 ~ 11694165 (+)
AMCG00002339 NA other downstream 24132 11710450 ~ 11715372 (+)
G122582 NA other downstream 149121 11835439 ~ 11836169 (+)
AMCG00002355 NA other downstream 208155 11894473 ~ 11898701 (+)
AMCG00002360 NA other downstream 325653 12011971 ~ 12016084 (+)

Expression


Co-expression Network