G122551


Basic Information

Item Value
gene id G122551
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11718530 ~ 11718969 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU153668
gcctccatccagggtacccttcaccatttgcactcttttcagcctctccattttgctcccccagacaaaccgaaatataattctggtcactagttttgcgacgaccttgtctggggggaagatcattCCTACATAGAGgagtatcgggaagaggatgaCCTctacgaccagcaccttaccggccatcgtcaaggtccttgtgctccagccgtggatctttcTTTGGACTTTAGATAAAgcctcctcccagctccgggtgcccgtgttggtcccgtcgatcgtgatccccagaaccttgatggacggcttcacagggaacacggtcggtgggccccggccgacaggccatgctctggagaggtagacctcgctcttggccctattgacagcggcccccatcgccctgcagaagccgtccagcagttcctcaaccctggcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153668 True 440 lncRNA 0.57 1 11718530 11718969

Neighbor

gene id symbol gene type direction distance location
AMCG00002335 NA coding downstream 7219 11708258 ~ 11711311 (-)
AMCG00002334 NA coding downstream 12835 11703336 ~ 11705695 (-)
AMCG00002333 NA coding downstream 17853 11694337 ~ 11700677 (-)
AMCG00002326 NA coding downstream 87621 11629149 ~ 11630909 (-)
AMCG00002328 NA coding downstream 97871 11612396 ~ 11620659 (-)
AMCG00002336 fbxo42,LOC107573139,LOC106565130 coding upstream 1247 11720216 ~ 11725951 (-)
AMCG00002338 NA coding upstream 48315 11767284 ~ 11772145 (-)
AMCG00002337 NA coding upstream 54627 11773596 ~ 11783638 (-)
AMCG00002348 LOC106928075,LOC100705239,LOC102211954,LOC103467007,LOC107092894,LOC101478036,LOC106947826,LOC105927147,LOC103150475 coding upstream 68533 11787502 ~ 11790736 (-)
AMCG00002346 NA coding upstream 81472 11800441 ~ 11803744 (-)
G122548 NA non-coding downstream 2385 11714409 ~ 11716145 (-)
G122530 NA non-coding downstream 90095 11601972 ~ 11628435 (-)
G122438 NA non-coding downstream 268739 11449566 ~ 11449791 (-)
G122432 NA non-coding downstream 308944 11407524 ~ 11409586 (-)
G122376 NA non-coding downstream 444003 11267564 ~ 11274527 (-)
G122632 NA non-coding upstream 125423 11844392 ~ 11845671 (-)
G122633 NA non-coding upstream 128112 11847081 ~ 11848192 (-)
G122636 NA non-coding upstream 138422 11857391 ~ 11859325 (-)
G122621 NA non-coding upstream 143934 11862903 ~ 11864056 (-)
G122726 NA non-coding upstream 324346 12043315 ~ 12045019 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 33441 11647911 ~ 11685089 (-)
AMCG00002317 plekhm2 other downstream 190612 11514000 ~ 11527918 (-)
AMCG00002301 NA other downstream 871329 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 1438546 10269889 ~ 10279984 (-)
AMCG00002279 NA other downstream 1865455 9836918 ~ 9853075 (-)
G122597 NA other upstream 12648 11731617 ~ 11734324 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 129501 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 150638 11869607 ~ 11872862 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other upstream 276859 11995828 ~ 12006352 (-)
G122862 NA other upstream 1309228 13028197 ~ 13029406 (-)

Expression


Co-expression Network