G122633


Basic Information

Item Value
gene id G122633
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11847081 ~ 11848192 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU153762
GGAGGGGGGAGACTGGGGGTGGTGCTGCAGGGGTCTCTCTGGGGCAGCAGGACTCTGAACTCATTCCCTTCATTCGGTCCTTTACTTATTCATTcccagatgtgtgtgtgtgtatgtgtgtggagtgagtttgtttttgtgtgaatgtgtgtggagtacgtgtgtgtttgtttccctaGTGGGTGTGACCTCTCTGTGACCTGTGACCTCTCTgtaaggggggtggggggtgggctGTCCTACACAATCGCAAGGATTCCCGCCCTATAGACCCCTAAACAGCACCGCACACTAAACATCTgtacactcactcactccctaTAGAGCCCTAAACAGCACCCCTGTGCAACACTGCACACTCAAAACATACAACACACCCCCTATACTGTACTGCTCACTCCCtgtacaacacagcacactttCTGCACTCTCCCCCCAGTACAGCACACAGCCCCAGTGGTTTTCAGCAGTTCCTCTGCAGTCTTCCTAGAGGTGGGGGCAGTGCACATCACACTGCACTCACAGTCACCCCCCCAGTGCAGCCCCTAACCCAGACCCCCTGCTCCCACTGCAACTCCTGTCTTCCTCACCTGCACAAATCTGActggggggtgagagagagagagagagagagagtgagagaggggctgggctgggctggccTGAGTATATCACCACTCACAACATCATTGTATtgggactggactggactagagtGGTATGGACTAGATCTAAGCTGGGTGGCTGGGCTGACTGGGGACTGACCCCCCCACACTGGTCACACtgactgagagagcgagagacgcACACAGGGACACCGAGGGACGCAGAGAGACAACAAGAGAACGACAGGCGACATCACAGCTTTCTGGAAACTCTGGCTGTCTTCCCAGCCCTGTCCGCTTGTCCCTTTGTTCGTCTGTCCAGGGTGTGTTTCAGTCCAAGACTCTATGCTGTGGGCACTAAACTTGCCTGTCCCGAAATGTCCACTCAGCACAGCTGTGAGAGTTTGTGTGGAACAGGACCTGTACTGTGACCCGGGGGGGATATTGACCCAGAGActccaaccccacccccccggccCACCCCCTAGGATCTGGAccctgcccccc

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU153762 True 1112 lncRNA 0.56 1 11847081 11848192

Neighbor

gene id symbol gene type direction distance location
AMCG00002349 NA coding downstream 13258 11830472 ~ 11833823 (-)
AMCG00002347 NA coding downstream 25650 11815327 ~ 11821431 (-)
AMCG00002352 NA coding downstream 41442 11804054 ~ 11805639 (-)
AMCG00002346 NA coding downstream 43337 11800441 ~ 11803744 (-)
AMCG00002348 LOC106928075,LOC100705239,LOC102211954,LOC103467007,LOC107092894,LOC101478036,LOC106947826,LOC105927147,LOC103150475 coding downstream 56345 11787502 ~ 11790736 (-)
AMCG00002345 NA coding upstream 16422 11864614 ~ 11869352 (-)
AMCG00002357 capzb,LOC106583096,LOC106565651,LOC105897928 coding upstream 33881 11882073 ~ 11892699 (-)
AMCG00002358 NA coding upstream 57718 11905910 ~ 11913015 (-)
AMCG00002359 NA coding upstream 64918 11913110 ~ 11918100 (-)
AMCG00002367 NA coding upstream 207449 12055641 ~ 12060552 (-)
G122632 NA non-coding downstream 1410 11844392 ~ 11845671 (-)
G122551 NA non-coding downstream 128112 11718530 ~ 11718969 (-)
G122548 NA non-coding downstream 130936 11714409 ~ 11716145 (-)
G122530 NA non-coding downstream 218646 11601972 ~ 11628435 (-)
G122438 NA non-coding downstream 397290 11449566 ~ 11449791 (-)
G122636 NA non-coding upstream 9199 11857391 ~ 11859325 (-)
G122621 NA non-coding upstream 14711 11862903 ~ 11864056 (-)
G122726 NA non-coding upstream 195123 12043315 ~ 12045019 (-)
G122801 NA non-coding upstream 347728 12195920 ~ 12243914 (-)
G122858 NA non-coding upstream 1152649 13000841 ~ 13005335 (-)
G122597 NA other downstream 112757 11731617 ~ 11734324 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 161992 11647911 ~ 11685089 (-)
AMCG00002317 plekhm2 other downstream 319163 11514000 ~ 11527918 (-)
AMCG00002301 NA other downstream 999880 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 1567097 10269889 ~ 10279984 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 278 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 21415 11869607 ~ 11872862 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other upstream 147636 11995828 ~ 12006352 (-)
G122862 NA other upstream 1180005 13028197 ~ 13029406 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 1801035 13649227 ~ 13654247 (-)

Expression


Co-expression Network