G122801


Basic Information

Item Value
gene id G122801
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12195920 ~ 12243914 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU153974
CACCGTTGTCTCAAAGTGTGCTTTATTATGTCTGCATGGTGATGATTCAGATTTACAATGATGTTTATTCAGATTTGCAATAATAGCACAAATGCCGCCCCCGGTTTGGCGGGCGTATGGACTGCAAGTGTCCGCCCCTCACACACCGCAGCCGGCCGTGTATTTGCTGAGATCTTTTCCCTTGCACTTGTTGACCCAGCCCACCCTGAGGACACAAACAGAGCCCTATTAGCACACAGCCGTCCAGTATTCACAAAAACAGCGTTATACTTCAGATGAACTACAGGTAGAAGAGAGGTGCTAAACACATTGCATTTGTTGCAaactatgaaatatataaatgaacgGAAATAAGTGAATAGAATTCACAATGGATGTTACACTTTGATTGATCTGAATTCATCATTAAGCAATGGTTGGCTTTCAtttgaagatttgtttttcattcttggGCACCCAAACCCACAGTCCAGTGTCAGGGCTGACAGACAGAGCATCCCGCCCTCTCCTGAACTCACCAGGCTGACATGCCGTTGGGGTCTCTGACCACGCGCTTGGCACAGGTGATGTCTACTCCGATGTTATCAGTCAGCAGCTCTGGAAGGACAAGACAGAGGTGAGGGTCTGGATTGAAAACAGGACCAAAGACCCGTCAGCACTGTGCTGCTCAAACAGGAACTAGAAACGGGCAAACCGCACATTGCACAGGAGAACAGCCAAGGGAACAGACGAGCTAATGgttcgagagagagagagagagagagagagagggagagaaagagcagACTAGGGGAATGGTGACGCAGCCCTCCTCTCAGGAAAGGAGTTGCACACTTCAGGGAGACAGAAGCAGTAAGAGCTCCACTCACGGCTGCATTCGATCCCACAGGCGTTCTTGGATCGGGGGGTTTTGTGATCCTCACACCAATAGCGGCTGTTGATCTGGAAGATGCCGTAGTCGGTGGATTGGTCCCGGTTGTGATTGATGGCCGCGGTGTTGTAACTGGACTCCGCAAAGGCCGTGCACACCCAGTCCAGCAGCCTTCAGCGTCCTGGCCAGCTCACAGCGCTCATAAGTCTTCCCGTCCACAGAGGACAGGGCCAGGAGGAGCAGAGCAGCCTTCACCAGGAGGGAATGCATGTTGGTGGCGGTGTCGTCTGTCAGCGCTGGGCTCTTATATAGGGCTTCTCTAGCCATCTGTAAGGGGTGTTTCATAACTTCCCCTAACATTTCCCATAAACGCTTCCCATTTCACATGACTGTTAAAACCTCACAGTGAAAGTGACTAGGTCCTCTTTTCTTGTTGTCgttttgatttttcattttgctaATGAAAGAGTGATGACGTTGGAGTGTGATCACTCCATCCTGTTATTGTTTAAACACTTCATAAATAGAGGAAGTGTAGAGACAAATCAAATCATATCTCTCTG
>TU153975
CACCGTTGTCTCAAAGTGTGCTTTATTATGTCTGCATGGTGATGATTCAGATTTACAATGATGTTTATTCAGATTTGCAATAATAGCACAAATGCCGCCCCCGGTTTGGCGGGCGTATGGACTGCAAGTGTCCGCCCCTCACACACCGCAGCCGGCCGTGTATTTGCTGAGATCTTTTCCCTTGCACTTGTTGACCCAGCCCACCAGGCTGACATGCCGTTGGGGTCTCTGACCACGCGCTTGGCACAGGTGATGTCTACTCCGATGTTATCAGTCAGCAGCTCTGGAAGGACAAGACAGAGGTGAGGGTCTGGATTGAAAACAGGACCAAAGACCCGTCAGCACTGTGCTGCTCAAACAGGAACTAGAAACGGGCAAACCGCACATTGCACAGGAGAACAGCCAAGGGAACAGACGAGCTAATGgttcgagagagagagagagagagagagagagggagagaaagagcagACTAGGGGAATGGTGACGCAGCCCTCCTCTCAGGAAAGGAGTTGCACACTTCAGGGAGACAGAAGCAGTAAGAGCTCCACTCACGGCTGCATTCGATCCCACAGGCGTTCTTGGATCGGGGGGTTTTGTGATCCTCACACCAATAGCGGCTGTTGATCTGGAAGATGCCGTAGTCGGTGGATTGGTCCCGGTTGTGATTGATGGCCGCGGTGTTGTAACTGGACTCCGCAAAGGCCGTGCACACCCCTGGCAGGACAGCAGCAGGGTTTGCGAAGCAATGCGTTTCAGACAGAGACGCAGGAGAACAATGACATATTCACGTGTCACTTCCAAAAGTTAGTCATGATGCtatgtttctaattttaaatgttggatcaggaaaacaaatattctgtATTATCCTAGAACAAATATAGCCCTGACGTGTATCTTGTgtttactaaaataaattaactttgatAATTTTTTCTGCTACTGAGGCTAATACTGTCTGATTATGTGCACCAGCCCAGTGGCAGTAGAGGAATAGCATCTCAAAGTAGTGtagtccagtgtgtgtgtgctctgtacTCACAGTTGGCCAGGCTGTATCCTCGGTACCCGTCCAGTCCAGCAGCCTTCAGCGTCCTGGCCAGCTCACAGCGCTCATAAGTCTTCCCGTCCACAGAGGACAGGGCCAGGAGGAGCAGAGCAGCCTTCACCAGGAGGGAATGCATGTTGGTGGCGTTCAGGAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153974 True 1434 lncRNA 0.49 2 12242121 12243914
TU153975 False 1207 lncRNA 0.51 3 12195920 12243914

Neighbor

gene id symbol gene type direction distance location
AMCG00002374 NA coding downstream 24239 12145146 ~ 12171681 (-)
AMCG00002376 NA coding downstream 53576 12140005 ~ 12142344 (-)
AMCG00002375 NA coding downstream 56164 12124198 ~ 12139756 (-)
AMCG00002377 NA coding downstream 95000 12099324 ~ 12100920 (-)
AMCG00002373 LOC101076725,LOC106573767,LOC106598349,LOC106598644,LOC106597130 coding downstream 99278 12082111 ~ 12096642 (-)
AMCG00002384 NA coding upstream 4233 12248147 ~ 12248946 (-)
AMCG00002383 NA coding upstream 7378 12251292 ~ 12260406 (-)
AMCG00002385 tsnare1,si:ch211-208k15.1,LOC106605505,LOC107679652 coding upstream 239980 12483894 ~ 12504026 (-)
AMCG00002389 NA coding upstream 738915 12982829 ~ 12997422 (-)
AMCG00002392 NA coding upstream 788715 13032629 ~ 13044363 (-)
G122726 NA non-coding downstream 150901 12043315 ~ 12045019 (-)
G122621 NA non-coding downstream 331864 11862903 ~ 11864056 (-)
G122636 NA non-coding downstream 336595 11857391 ~ 11859325 (-)
G122633 NA non-coding downstream 347728 11847081 ~ 11848192 (-)
G122632 NA non-coding downstream 350249 11844392 ~ 11845671 (-)
G122858 NA non-coding upstream 756927 13000841 ~ 13005335 (-)
G122869 NA non-coding upstream 808112 13052026 ~ 13052390 (-)
G122877 NA non-coding upstream 823307 13067221 ~ 13067627 (-)
G122879 NA non-coding upstream 824920 13068834 ~ 13069238 (-)
G122897 NA non-coding upstream 897954 13141868 ~ 13147672 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 189568 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 323058 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 341029 11848470 ~ 11854891 (-)
G122597 NA other downstream 461596 11731617 ~ 11734324 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 510831 11647911 ~ 11685089 (-)
G122862 NA other upstream 784283 13028197 ~ 13029406 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 1405313 13649227 ~ 13654247 (-)
G123263 NA other upstream 2697346 14941260 ~ 14946311 (-)
G123585 NA other upstream 4592242 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 4714248 16958162 ~ 16974301 (-)

Expression


Co-expression Network