G122829


Basic Information

Item Value
gene id G122829
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12372801 ~ 12373031 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU154008
caagtcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaagacagaaaacaggagacacttcttcacacagagagtcgtcacaatctgaacaaactccccagcgatgtggctgaagagacaatttgggaacattcaaaaacagactggataggat

Function

NR:

description
B-cell antigen receptor complex-associated protein alpha chain-like

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU154008 True 231 lncRNA 0.46 1 12372801 12373031

Neighbor

gene id symbol gene type direction distance location
AMCG00002380 NA coding upstream 125812 12244723 ~ 12246989 (+)
AMCG00002381 NA coding upstream 128913 12242286 ~ 12243888 (+)
AMCG00002379 NA coding upstream 131446 12226849 ~ 12241355 (+)
AMCG00002378 NA coding upstream 161482 12204021 ~ 12211319 (+)
AMCG00002371 ptpn23,LOC106597002,LOC107591991 coding upstream 251024 12106189 ~ 12121777 (+)
AMCG00002386 NA coding downstream 265455 12638486 ~ 12696128 (+)
AMCG00002391 NA coding downstream 648536 13021567 ~ 13024109 (+)
AMCG00002387 cyhr1,LOC107591623,LOC107742848,LOC107696565,LOC107706189 coding downstream 698395 13071426 ~ 13085078 (+)
AMCG00002394 NA coding downstream 716385 13089416 ~ 13090383 (+)
AMCG00002400 NA coding downstream 767636 13140667 ~ 13141587 (+)
G122744 NA non-coding upstream 242054 12129878 ~ 12130747 (+)
G122743 NA non-coding upstream 243123 12128380 ~ 12129678 (+)
G122737 NA non-coding upstream 267278 12104670 ~ 12105523 (+)
G122592 NA non-coding upstream 515475 11856478 ~ 11857326 (+)
G122549 NA non-coding upstream 656100 11716355 ~ 11716701 (+)
G122830 NA non-coding downstream 31911 12404942 ~ 12411141 (+)
G122868 NA non-coding downstream 678994 13052025 ~ 13052390 (+)
G122876 NA non-coding downstream 694234 13067265 ~ 13067635 (+)
G122911 NA non-coding downstream 814918 13187949 ~ 13188278 (+)
G122914 NA non-coding downstream 816251 13189282 ~ 13189862 (+)
G122746 NA other upstream 232336 12133786 ~ 12140465 (+)
AMCG00002360 NA other upstream 356717 12011971 ~ 12016084 (+)
AMCG00002355 NA other upstream 474100 11894473 ~ 11898701 (+)
G122582 NA other upstream 536632 11835439 ~ 11836169 (+)
AMCG00002339 NA other upstream 657429 11710450 ~ 11715372 (+)
AMCG00002390 NA other downstream 658728 13031759 ~ 13051971 (+)
AMCG00002388 NA other downstream 671662 13044693 ~ 13070832 (+)
AMCG00002393 NA other downstream 752347 13125378 ~ 13129697 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other downstream 1954601 14327632 ~ 14361536 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 4585130 16958161 ~ 16960082 (+)

Expression


Co-expression Network