G122862


Basic Information

Item Value
gene id G122862
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13028197 ~ 13029406 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU154046
ctctctctttccatccTACAGGTGCTGGCAGAGGTGAAATCCTGGGATCTGCCCCCCCTGAGGGAGCGCTACAGCAAGGCCTGCCAGAGCCTGGCTGTGGTGGAGAACAGGCTGGTGGGTCGCCTTTGTGAGGTGCAGGCGGGCAGCCCCTCCCTGAGTGTCTGTGGGCTCAGCCTGCCCCCCGCCGCCCTGCGCCCGCTGCTGCGCTGCCTGAAGCTGCAGGCCGACCTGAAGGAGCTCCGGCTCTCGGGCAACCGTCTCCACGACGGCCTGATGGCGGAGCTGGTTGCCACGTTAACGACCATGCCCAGCCTTCGCCTGCTGGACCTCTCCTCCAACCACATCACGGGGGAGGGCCTGAGGAAGGCTGCCGCGGCCCTGGATGGGAGGAGCCAGGCTGCGTTCCCGTGCCTGGAGGAGTTGGACCTGAGTGTGAACCCGCTGGGAGATGGCGTGTCTCAGGCGCTGTCCATGCTGCTGTCATCCTGCCCCCTGCTGGCCACACTCAGACTGCAGGCCTGCCAGCTCCGCACCCGCTTCTTGCAGCAGCACCGCCTCCTGTTGGCCAGCGCTCTGGCAGGTGAGACCACACCCACTGACCAGGCCACTGGACTGCATCCACACACACTCGCTGAGACCAGGCTGTGCACAGTAGTCTGTATGTTGTACCTGcgatctgtgtgtctgtcccacaatgcactgggCGCCACAGGACTGGAGCTCATTCTGAAGACACTGCCGCTGCATTCCCACATACACCTGTACCTGTGTGCCATACGCAGGAGCCCTGCAGACCCCCACGCCACCAAGCACCTGACGGCACACCTGTCCCAGG
>TU154047
ctctctctttccatccTACAGGTGCTGGCAGAGGTGAAATCCTGGGATCTGCCCCCCCTGAGGGAGCGCTACAGCAAGGCCTGCCAGAGCCTGGCTGTGGGTGAGtgctcactgtgtgtgtgtgtgtgtgtgtgtctgtctctgacTCTGTACAGTGGTTCTATAATGTCCAGTCTCTCTCTGACAGTCCTCCCTGGTGCGCTGTGCAtctcctctgtgtctctgtctctgtacagTGGTTCTATAATCTCCTccgtgtctctgtctctgtgtgctcAGTGGAGAACAGGCTGGTGGGTCGCCTTTGTGAGGTGCAGGCGGGCAGCCCCTCCCTGAGTGTCTGTGGGCTCAGCCTGCCCCCCGCCGCCCTGCGCCCGCTGCTGCGCTGCCTGAAGCTGCAGGCCGACCTGAAGGAGCTCCGGCTCTCGGGCAACCGTCTCCACGACGGCCTGATGGCGGAGCTGGTTGCCACGTTAACGACCATGCCCAGCCTTCGCCTGCTGGACCTCTCCTCCAACCACATCACGGGGGAGGGCCTGAGGAAGGCTGCCGCGGCCCTGGATGGGAGGAGCCAGGCTGCGTTCCCGTGCCTGGAGGAGTTGGACCTGAGTGTGAACCCGCTGGGAGATGGCGTGTCTCAGGCGCTGTCCATGCTGCTGTCATCCTGCCCCCTGCTGGCCACACTCAGACTGCAGGCCTGCCAGCTCCGCACCCGCTTCTTGCAGCAGCACCGCCTCCTGTTGGCCAGCGCTCTGGCAGGACTGGAGCTCATTCTGAAGACACTGCCGCTGCATTCCCACATACACCTGTACCTGTGTGCCATACGCAGGAGCCCTGCAGACCCCCACGCCACCAAGCACCTGACGGCACACCTGTCCCAGG

Function

GO:

id name namespace
GO:0004329 formate-tetrahydrofolate ligase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154046 False 835 TUCP 0.65 3 13028197 13029406
TU154047 True 882 TUCP 0.63 3 13028197 13029406

Neighbor

gene id symbol gene type direction distance location
AMCG00002389 NA coding downstream 30775 12982829 ~ 12997422 (-)
AMCG00002385 tsnare1,si:ch211-208k15.1,LOC106605505,LOC107679652 coding downstream 524171 12483894 ~ 12504026 (-)
AMCG00002383 NA coding downstream 767791 12251292 ~ 12260406 (-)
AMCG00002384 NA coding downstream 779251 12248147 ~ 12248946 (-)
AMCG00002382 smarcc1,LOC106605342,LOC106581105 coding downstream 825171 12185034 ~ 12203026 (-)
AMCG00002392 NA coding upstream 3223 13032629 ~ 13044363 (-)
AMCG00002398 NA coding upstream 64658 13094064 ~ 13102528 (-)
AMCG00002395 NA coding upstream 89074 13118480 ~ 13121283 (-)
AMCG00002399 NA coding upstream 122183 13151589 ~ 13152326 (-)
AMCG00002396 NA coding upstream 122962 13152368 ~ 13179775 (-)
G122858 NA non-coding downstream 22862 13000841 ~ 13005335 (-)
G122801 NA non-coding downstream 784283 12195920 ~ 12243914 (-)
G122726 NA non-coding downstream 983178 12043315 ~ 12045019 (-)
G122621 NA non-coding downstream 1164141 11862903 ~ 11864056 (-)
G122636 NA non-coding downstream 1168872 11857391 ~ 11859325 (-)
G122869 NA non-coding upstream 22620 13052026 ~ 13052390 (-)
G122877 NA non-coding upstream 37815 13067221 ~ 13067627 (-)
G122879 NA non-coding upstream 39428 13068834 ~ 13069238 (-)
G122897 NA non-coding upstream 112462 13141868 ~ 13147672 (-)
G122942 NA non-coding upstream 255931 13285337 ~ 13286312 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 1021845 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 1155335 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 1173306 11848470 ~ 11854891 (-)
G122597 NA other downstream 1293873 11731617 ~ 11734324 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 1343108 11647911 ~ 11685089 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 619821 13649227 ~ 13654247 (-)
G123263 NA other upstream 1911854 14941260 ~ 14946311 (-)
G123585 NA other upstream 3806750 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 3928756 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 4660602 17690008 ~ 17706289 (-)

Expression


Co-expression Network