G122897


Basic Information

Item Value
gene id G122897
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13141868 ~ 13147672 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU154087
CTAGTTTGTCAACACTTTATTGAatagtaacaataaaaaaagaacatttgcattgaaattcaatgacaacaacagcaacaaaaaacctgtgacagtttgtttgttttcaagttttctcaacatacaatacaacagaaaaataGGAAGTGACTTCACAAAAGTCACTCCACGTACAGATCCGCATTATCGCACATCCTCAGGTAACCGTGGACACGAAAGACTGGAAAAGTGGTCGCTCATATCAATGGTTACTGCCAACAGATGAGCTGATTGACAGGTTTTGCCTCAGCATTTACATTATGGGACAGCTGAGAGGGTGGGAGCTGGGCTGGTGACCAGGGAACAGGTGAACCCCAAGGCAACTGAAACCACACAGGGCTCTGAGCGTCTTTAGGAGTGTCCACTCTGACTCAGCATAGCAGTGGGGTAGAAACAGCCCAGTCAGCAGGGTGTACAGTGGCACCTGATGGGGCAACAGAGCTGGGTCAGTGCCAGGGGGCTGGGCAGGGATTCCTCTTGCAAACTGCTCTTTTATTTATGCAAAAAGAACAGTAAGAAATGTATTCCCTGCTTTCCCAGTAATTCAGTGGATGGGAGAAAATTGGACACTGGTCTTCATGTACAGCATTAGTAAAGAGGTACaagacatattttgtttatgcatCTTGAAATGCTCCATAATCACACAATAAGAATAACAGTAGCAATAAAGAGTACATGGCTGACATCTTTCACATACGGAGGCTGTTAATAGAGAACCATGTTGTGTTTCACTTTTCCGTATTTCTCAAACTTGTCTGTTCTTGCACAGCACCCCAGGTTTCACAACCCTGTGTactgcagacagagacagacgcGAGGGCAGTAAGGCAGTGGCTGCAGGTCACACACTGTGAGTGTCACCATCTCTGACCGCAGTCTGCCCTCCCTCTCAGCCCCCAAATCCTTATTCACCTGCTTCTCAGTTagaagtatttatattttcccagAGACATGATCATTTCTCAGTCTTTCAGCCAGTTCTTGCACACTGATCTGTGCTTCTGggtatttatatactgtatgtgtgtgtgtgtgtgtgtgtgtgtatacacacacacacacacacacgcaataacaaaataacagatAAACGTGACGTTTTTAAAACAGCTTTGACATTGGTCAAAAGTCACGTGCTTCAAGATTTTTTAGCTGCAGAAGATGAGACGAAggaaatctgtatttaaaataaaataaaaataaaaaataatacatttgaagattCCAACCTGTCTTGGCAAACacaaattttaataataataataataataataatactgataagaTATCTCCCCAAAATGGGATAAACCAGtgcatctttttctttctttttaagttaacaaaaacaaaccatttcaatttaactacagaaacaataaaaaaaaatacctgaaaCACCTATTAAATGACTGCCAGCATGCACACCATCACAGTAGCAAGACATTgcgtaggttttttttttgtgagtgtttttttgttttttctcagtcTGCAACATATTTACACTGTCCTGTTTTACATTCACAGGCATGCAGATACTGAGAGACTGGTCACTGAGCTGGACAACGATATAGCAGCAAAACTCGCATTGCCACAACTCACAGAGTTGCGACTTTTTCCACAGACAGGTTTGAGTTTTTAATTCTAGTTTCCtctcccctccacccccccagtCACAGGGATTTGGGAATGAGAAGGAAAGGTGAGGAAGGGTCAAAGTCAATCCCTGCAAGGGCAACATTATCCTGAACCGATGGGATAAACCAGCActtcagaaacacagagcacagagagggggggacagggaCGGGGACGGGGATAAAGACAGAGATTGCGAGTGCAGGAGTGTCAGGTGCAGCTCCCATTTCCAGGGACACTCTTCAGATGTATTCTGGAAGATTTAGTACATGTAGACTGGTCTTTACAAGGTGTCTCTTTTAACAATGCTGTGGATTgttaaaacaataagaaaaggAATACATGATCTTATTTGTTCCACTTGTCTCTTGATGCTGGGACCAGCTGGCAGAGCATGCAATGAAGGAGTGGAGCGGGGGGGCAGAGAGGGGGCCACCTGGGCCCAGCAGCACAGTAccagcatcacacacacacactctgaatcACTGCCTTCTGGGAGCCTGCGGGGGGCAATGGAAACAATTGAGGGGGATTCCAAAATGTGTGTGGTGCACCTGTAGTCCCCTTCCCTTCTCCCCTCATGTGCATAGTCAACTATTTAACATATGCACACAGTTTCCATAATCACAAGGAGTGGTTAAATTACTCCCAGGCCTAATTAGTGTTAAATATTTCCACAATCGAAGagggaacaaaaaccagaagcaGCAGCTGTCACTAAGCAAATACTGCTATTGCAACCCACAGGCCATTGCCCACCGGGGACACTTTCAACTGCGAGGCCTGCCCACAGAGAAGATGGTCCCAGGTCCCCAACACTGGCTGCCCTTCTTGAGAGGGAACAAGCAGCGTGTTTGTGCGCCGCCCTGCACAGGTTAATGTATCTGGcagcaacagaaaacagaacagcTTTGTCTTCGCTCTGCAGAGGCCAGCAGGGTGTGTGGAGAGCATCGATCCATGGCGCAGAGAAGGTCAGGCACAAGAAAAGGCCATTCAGCCGCAGGCGAGCTGGTCCTGCCTGGTGAGAGCGCAGGCTGTGTGCCTGGCCTGCCCCCCTGCCTGCTGCCCTGAAAGCCCCCAGTGTATCAGCTCTGACAGCCCAGCCTGATTGCGCTGAATGAGCGAGGAAGACACTGTCTCCTGCGCCCCCCTCCGTCTGCCTTTCTCCATCTCGCTCCCCCTGCTGTCCTGCCCTGCGCTGCTATTGTCTCAGTCCTGGAAAGCCACCAGTTGTGCTTTATTGcgaaaagagaaagagagacagaaaaagaaaggaaggatAAGGATTTTCAGGCACTTCCTTAAGAATGCTGAATCCATgacttccttttctttctctccctctcaagCCCTCTCTACTGCCCACCacctcacccctctctctctctctctctctcggtctccaGGCCCCATGGTTATGCTAGGGTTATTGTTGGAGTTCTTTACCCCCAGGACAGCTGTGCTCATGTCGATAGGATTAAGGCGTAAGTTCAGGTTGTGCTAACATGACAACCACTACACCCCCTCCCTGCCATAGACCCCCAGATAACATTGCTCTCTCTGCTGaggatgacacacacacacacacacaaccggATTTACTGCGCAGTGACAAGACCTCTCAAGCTCACAGATGacatctccctctctcacaaAGGAACCTGAAGATTGTATTTTCAGCTTTACAAGAATTGCGCTCTCTCTGATCTACCCTGCAATggatttttccccccttctggTGGGTCAGAGAGCCTGTATGCCTCACATAGTCAGAACAGAACTAAACCGAATGAAAGACTGGGATCCCCCACTCCATTAACGGGACCAGTGGTGTCTTGGATTCTGCTGGCGAGAGGAGACCTGAATCCTGCAGCAGGACAGTGTGCCCCTGTGGCCACAGCGAGGGTTGATGAgaaggagatggagggaggaggagaggaggagagcaggaGGTCTGTATGTTTCTCCACAGAGTTGCTTGTTCACATCTGTGTTATCTACTCCTCTACGGACACAGCTCTGTAGTCAGTCCCCGCTCTGATACAAAATGTCACAGAGAGTAAAGGACTGCAATCGCAGGGGGACACTGACAGGCAAAGACTGAGCTCCCCCCCCACAGCACTCTCTCTCGCTTGCCATCCCaatgtctccatctctctccctccctgtgaTGCAAGCATCCACATTGTCATGGAAACTCAAGTTTTATGTCCACAAATAGCACACACGTCTCCGCTTCTCTCCCGATCTCTTGCTCCCTTGCTTGTCTTtttcctacacacacacacaaacacacactccgATCACCTCCCTGCAATAAGGGCACTGGGCTCAGCTGGCAGGTTCACATTACACTGACAGGGGACGACAATTACTGTAATTTGTAAGagacaaacaacaaaagaaaaatgcaatcatGCAAGCCTCacagggaaaaagaaaactaaacccCTGGCTGTGGTATAGTTACATGTATACCTGCAGCCAGAGATGCACAGTTTTCACACTGCCTGCTTGAATGAATATTTACCCACTTGTAGTGTATATGCCAGTTAATACTTCTGCTTCTGTTTAGGCAATAAATACAGACATCCAtccacactcactcactcctaGTTTGTGAGCTCTGCGCATCCGTGCTGAAGGCAAATGAACTGACATCGTTAGTTTGCTTTCAgcgcagacacacgcacacacacacattcacacatgtGTACACAAGCACAATCAGGGAGCCCCAATTAAATtagcaaatatggatttgtttttgctaGAGGGGAATAAACACACGAGATCTTGGAAGTGCATGGCATGCCGTGCCATGCATTAAGCCCAAATAGTGGGGATTAGAGGTGGAATTGATCATTAATCTGCTAATCCCATTAAATGAACTATGGCAACTATGCTGACGACAGCGCAGGACAAACTGGGCCACAACAGACAAGACAAAAAGTCTCCCAGTGTAACCTGCAACACTGATTGACAGCTCACAGTCAAAAAATAGGCACTGGGCTCCAACTGCAGACCACCCACTGTTAAATTGCCCAGGGCAAGGGGCTCCCTGAGGGCATTCTCTCCCCATCCTGCTACCATTGCCTTTCCTCCTGGAGTTTATGAAACACGTTGCCATTCTGAGCTCTAGGGCTGCTGATATTTGCTCTTGAAAACCAGACGTCTGCTGCGATTTTGTCTGGATTTCAGTAAGCGCTGGAGGTAACAGTGTCTCGCATGGAGGACTGCAGTGAAATTATTCTTCACAGTCTCTCCAAGATAGTGCtagagcaatatatatatatatatgctagaCTACACTGCCTGCAAACAATCAGCCTGTTACTAGGTCACAGAATCCAGCACAGGTCGAGAACTAATATgaggtaaataaaataagttttggCAGAAATGTAGCAGAGAAGACTGGCGACTCCCCCGATCAAAGGTACAAAGTCAATCACTAAACGTGCCTGGTGGGAAACACAGGGAAACTAACCAGTCTCTGATGTCACAACAACAGGCTGATTGCCATTAGAGTGTGCGTTTACTGTGGGATCAATCTCGTACAAAGTGCATCAGTTTCACAGGGAACTGatctgtttattgatttatcgTCTGTCGTGGGCACAGTAGCCAGACTCCAGTCCCAGCTTCCGCTGCATCGTGAAGGCCTGCACGGTTTGACCAATTGTCTGTAAACAGTGCAAGGAGCTCAGAATGGCTGCACACTAAAGCATGGTAGGGGCGAGGGAACTAAAACAACAGGAGTGAGGCGGGTGGAGGGACCAGCACATCGCATGTCAGAGAGCGGGCAGGACAAGCAAAGTCGCATGTCAAAGGGGAGCCCTGCAGAGCTTCAACAGTCTTTTCAAGTACAGTCAGGTCATGTATCGAGTGTGGGGGTGGGAGTGGAGCCACCGCCAGTGTGTCCAGATTGAAGAACTGCGAGAGAGACTATGAGGAGGTGTTGGGTGCGCAGCTGCATGGGTCAGCAGTTTGATCAACTGGTGTACTCTGGGCTGCTTTTGTACCTGTAAGCATTCCACACGCAGTCCACAAGCACCATAGACCagtaatcaataataatacaattaaataaataaaactagtaCATTAGACTTGGGAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154087 True 5805 lncRNA 0.47 1 13141868 13147672

Neighbor

gene id symbol gene type direction distance location
AMCG00002395 NA coding downstream 20585 13118480 ~ 13121283 (-)
AMCG00002398 NA coding downstream 39340 13094064 ~ 13102528 (-)
AMCG00002392 NA coding downstream 97505 13032629 ~ 13044363 (-)
AMCG00002389 NA coding downstream 144446 12982829 ~ 12997422 (-)
AMCG00002385 tsnare1,si:ch211-208k15.1,LOC106605505,LOC107679652 coding downstream 637842 12483894 ~ 12504026 (-)
AMCG00002399 NA coding upstream 3917 13151589 ~ 13152326 (-)
AMCG00002396 NA coding upstream 4696 13152368 ~ 13179775 (-)
AMCG00002397 NA coding upstream 35049 13182721 ~ 13186037 (-)
AMCG00002403 nacad,LOC107579097 coding upstream 49153 13196825 ~ 13213803 (-)
AMCG00002404 NA coding upstream 71936 13219608 ~ 13227144 (-)
G122879 NA non-coding downstream 72630 13068834 ~ 13069238 (-)
G122877 NA non-coding downstream 74241 13067221 ~ 13067627 (-)
G122869 NA non-coding downstream 89478 13052026 ~ 13052390 (-)
G122858 NA non-coding downstream 136533 13000841 ~ 13005335 (-)
G122801 NA non-coding downstream 897954 12195920 ~ 12243914 (-)
G122942 NA non-coding upstream 137665 13285337 ~ 13286312 (-)
G122945 NA non-coding upstream 141369 13289041 ~ 13289249 (-)
G122946 NA non-coding upstream 141636 13289308 ~ 13289916 (-)
G122947 NA non-coding upstream 143454 13291126 ~ 13291819 (-)
G122948 NA non-coding upstream 144649 13292321 ~ 13292568 (-)
G122862 NA other downstream 112462 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 1135516 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 1269006 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 1286977 11848470 ~ 11854891 (-)
G122597 NA other downstream 1407544 11731617 ~ 11734324 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 501555 13649227 ~ 13654247 (-)
G123263 NA other upstream 1793588 14941260 ~ 14946311 (-)
G123585 NA other upstream 3688484 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 3810490 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 4542336 17690008 ~ 17706289 (-)

Expression


Co-expression Network