G123027


Basic Information

Item Value
gene id G123027
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 13487114 ~ 13491617 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU154255
CAGCAATACTGTGATGTGGTGAAAGTGCGGAGAGGGTAAAACTGTAGTCAATTTCATTGTATAGTAAAAGTTGGTTGAGGTTCcgatgttgttttattttcctgatgtCTCTCTCCGTACCACCTCCACTATCTTGCTGCAGGAAACGGACGCCGATTCCCAGAGCCGAGCCACGGCAACCTGGGCGGAAATTCCGGGTACTTCACCTGAGGCCTCTGGGACTTGTAGTTTTTACAGCACGGCCAGTGTTATTTGAATGTCAGGAAAGAACTACAACTCCCAGGACACGGCGGGGCTCCTAGTAAGGTGCAGTTGGATTtgtagtctttaaaaaaaagtgagcCCCAGATGTGTTTCTGGTACCAGCGAAAGGCTCTAAGACGAACTATAGCTCCCAGAGTTCAGCGGGCCGGTTTGTGTGTTTCAACCGAGGAAAAAGGCGGAAGGCTGCCGCGGAGAGAAGACGCCGAGGCGGCCGTGTTTGGCTCGCTGTGTTGACGAGATGACTGTGTCGAGTGGCGAGAGCCGCCAGCCTCCCCGCTCCTTCACTGCTGGCGATGTCACTGAGAGGAGAGCATTAGGACTCTGGGAGTAAGAGCTGTCTATGGCCTGGGCAACACATTAAGATAGCTGCCCTGTGCGTTGTAGGCACAGCCGGTGTCCCGCAAACCATATCTGTTTGCAAGCGTGGAGCAGCGCCAGGACACCGAGGATGGAGTGAAGAcgcagacaggagccacagccATGgtaGCTGTAGGTGCTCCTGTGCTTCATTGGCAAATGATTTCCAGGAACCTGTAGTCTGTTGTATTTTCAGCTGATCTGCGCGCTGTGCAGCTGGGGGGCTGGTCTCCCGTCCTGCACAGGTGATAAGCAGTGAAGGTGGCCAGTGATCGCCCTGCTCAGCCCAGACACAGGCAGGAACGGAATTATCTAAGCTGCCTGTTGCTTCATTCCTACGGAGTGGGCTGGCGAGGAGTGCCCGGGCTGCAGTGGCTGTGTCTGCGGGCTCTGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154255 True 1017 lncRNA 0.54 4 13487114 13491617

Neighbor

gene id symbol gene type direction distance location
AMCG00002417 LOC106605926,LOC106594359 coding downstream 8238 13458483 ~ 13478876 (-)
AMCG00002416 NA coding downstream 56730 13414300 ~ 13430384 (-)
AMCG00002415 NA coding downstream 75984 13406352 ~ 13411130 (-)
AMCG00002411 NA coding downstream 103059 13377167 ~ 13384055 (-)
AMCG00002410 setd2,LOC106606040,LOC107596709 coding downstream 117717 13332995 ~ 13369397 (-)
AMCG00002419 NA coding upstream 22707 13514324 ~ 13531753 (-)
AMCG00002420 NA coding upstream 45865 13537482 ~ 13570758 (-)
AMCG00002425 glipr2 coding upstream 179732 13671349 ~ 13678716 (-)
AMCG00002428 NA coding upstream 187155 13678772 ~ 13691226 (-)
AMCG00002426 galnt1 coding upstream 236993 13728610 ~ 13741394 (-)
G123014 NA non-coding downstream 30055 13455085 ~ 13457059 (-)
G122991 NA non-coding downstream 74818 13411499 ~ 13412296 (-)
G122957 NA non-coding downstream 181519 13303152 ~ 13305595 (-)
G122956 NA non-coding downstream 184032 13302120 ~ 13303082 (-)
G122955 NA non-coding downstream 186996 13299523 ~ 13300118 (-)
G123152 NA non-coding upstream 586627 14078244 ~ 14111201 (-)
G123175 NA non-coding upstream 1051204 14542821 ~ 14543020 (-)
G123177 NA non-coding upstream 1074630 14566247 ~ 14567067 (-)
G123178 NA non-coding upstream 1095597 14587214 ~ 14588758 (-)
G123179 NA non-coding upstream 1097192 14588809 ~ 14594542 (-)
G122862 NA other downstream 457708 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 1480762 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 1614252 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 1632223 11848470 ~ 11854891 (-)
G122597 NA other downstream 1752790 11731617 ~ 11734324 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 157610 13649227 ~ 13654247 (-)
G123263 NA other upstream 1449643 14941260 ~ 14946311 (-)
G123585 NA other upstream 3344539 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 3466545 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 4198391 17690008 ~ 17706289 (-)

Expression


Co-expression Network