G123178


Basic Information

Item Value
gene id G123178
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14587214 ~ 14588758 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU154436
CTTCATAGGAATTGCTAATGAGCCACTGCGCGACGCCTCTCAATACATCACTCTAGTGACACATGGAGCCATGTATTTCCCTCTCTTGTTTTCCCTCTCTACAGATCTCCTGTtacctgggccctggcagtgTGTTCACAGCCCTGATCGGATGATGAAGAGCTGCAGTTTGAGGCGAGTGCAATGAGAAGATGGGGATGCTAGCTATGCCTGCTGTGTacaactgaaatggaaaaagcCCCTCATACATCTGCAATAGTATGAAATACTACAATACATCACACGGTTTGACAAAATCGACATTCAGTGTGATTAATGCTGCTTTAAACCCTACTGCTGcccctatttaaaaaaaacctaaaaaacacattttttaccTATGCCTTTCTTTTCTGAGCACACCTCCTTTCAGAGCATGTCTAAGGCAGTATcaggttgatttattttaattcgaGGGTAATGGGTTCCACATCTCTTCAGATTCCATCCTTTCTTTCCCAGCAGCTTCAGCTGGCACTAATTCAAATACTACTGCCACACTATCAGGGAACCAAATCCCACTAAAATATCGAAACCAGCATCACCAGAACTAGGCTGGCCTTTccagaataaataatttgtcTTCAGTTGCAGATATGCAGATATTTAGAGTATAGGATAGTTGATGTGCCGTATCCCCATCGAATACAGGTTATGCACCAATACTAAACAACACATGAAAGCAGACAAATCTCAGAAGAGGGGGATCCCTCTGTGGGACGGGTGGCTGAAAATGAATGTACCACTGAATAAAATGCTaaaccaaacaataaaaagataACTCACAATTgcactttatttcaaatgaaattcaaatatAAGCATCTTGGCAGGCCATTTTCTGAAGTGACCTGACAAAGTAGCATTTCCTCTCACTTAATTGCATCACCAATAGCAGGAGGCAGACCATTAACATAGTGCTCCTGTAAAGTTTCCTCAAACCTCTTCACTCTTTACATTCCCAAAAAAAGTGACTTAATGGCCCTGCCCCAGCTTCACAgtgtaaaaatattttcagttcCTTAAAAAAAGAGGTTTTGGTTTTACCCCATGTTGGCTAACAGTCTAAAAaccagaacaaaaaataaatacaaataaacaaacaaaacaccttaATGAGAATTACAAAAAGTCATAGAAAGTGTGTAGGAGATTACAATTTCCAAGAACCGTGTCTTTATATCACCTGACCGAGAACCTTGCCTTGTCTGTTTATCAGGCGCATGACATAAGAAAAACTGCATGACATAGaccataaaaaaattaaataaataaaaactctaCAGAGCATCTGAAATGGCTGGTCAGAACTTTTGCCAGTGGGAGGCCGAGCCCCCGCAATGTTTCCGTTTCTTGACATCACCTGGCTTTTAGCTTGGCTTGCATTCATTCTTGCTGCAGGTCGCCTGGCGTTCGATCCTCCACGTGCCTTCTTCATATGTGCAGTAGCAAATTGTGCACTCGTCAATTTTCACCTCCCGGCCAGCTGGTATCACAGCGTTGTCA

Function

GO:

id name namespace
GO:0031224 intrinsic component of membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU154436 True 1545 lncRNA 0.41 1 14587214 14588758

Neighbor

gene id symbol gene type direction distance location
AMCG00002438 NA coding downstream 217394 14365055 ~ 14369820 (-)
AMCG00002435 NA coding downstream 435369 14127804 ~ 14151845 (-)
AMCG00002436 NA coding downstream 485815 14070785 ~ 14101399 (-)
AMCG00002434 NA coding downstream 543310 13990906 ~ 14043904 (-)
AMCG00002433 NA coding downstream 620747 13966110 ~ 13966467 (-)
AMCG00002445 fignl1 coding upstream 91626 14680384 ~ 14682429 (-)
AMCG00002448 NA coding upstream 107640 14696398 ~ 14731127 (-)
AMCG00002447 NA coding upstream 173079 14761837 ~ 14787948 (-)
AMCG00002446 NA coding upstream 206329 14795087 ~ 14849774 (-)
AMCG00002452 LOC104940895 coding upstream 322697 14911455 ~ 14920505 (-)
G123177 NA non-coding downstream 20147 14566247 ~ 14567067 (-)
G123175 NA non-coding downstream 44194 14542821 ~ 14543020 (-)
G123152 NA non-coding downstream 476013 14078244 ~ 14111201 (-)
G123027 NA non-coding downstream 1095597 13487114 ~ 13491617 (-)
G123014 NA non-coding downstream 1130155 13455085 ~ 13457059 (-)
G123179 NA non-coding upstream 51 14588809 ~ 14594542 (-)
G123204 NA non-coding upstream 103212 14691970 ~ 14692999 (-)
G123346 NA non-coding upstream 892386 15481144 ~ 15483716 (-)
G123385 NA non-coding upstream 1098697 15687455 ~ 15689341 (-)
G123401 NA non-coding upstream 1134175 15722933 ~ 15723137 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 932967 13649227 ~ 13654247 (-)
G122862 NA other downstream 1557808 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 2580862 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 2714352 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 2732323 11848470 ~ 11854891 (-)
G123263 NA other upstream 352502 14941260 ~ 14946311 (-)
G123585 NA other upstream 2247398 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 2369404 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 3101250 17690008 ~ 17706289 (-)
G123829 NA other upstream 3333694 17922452 ~ 17989465 (-)

Expression


Co-expression Network