G123263


Basic Information

Item Value
gene id G123263
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14941260 ~ 14946311 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU154543
gtaatagtattttaattttcaatttagaAGGAATTAAGGAATACAATAGCACTAATTGTCACTTCCCCAGAATCAAGACATGTATAGACTTAACCATGCCAGCATTCAAGAGTAGTTTTCCACAACCTTCATTAGTAAACTCCTGTGAAGCTCCAATATGACACCAAACAATGACAAAATCTGCAGTAAATactattatttcaaaataaggGATTAACAAATGGAACAAGGATTTCAATTAGTTGGTACGTAGTGCATCTTTTTAATTCAACTCTTGCCaagcaaatataaaattataaaactgtTAAACAAGTGGTAACTTATGTTACAGAACAATGAATCTCTACCGAAATACAATTTTCTTTACACTTGGCAAAACCTGGAAGTGTTCAAAAACATTGTTCTAAGACATTTAGTGATCTTACTGGTTCATTTTATTAGCTTCTTCAATTGTCACCATTATGCACATCTCTCAACACTGGAAAAAGGCCTGTAAACTGccttttaaacaatttttcaTTACAGGAATACAAAAAGGCAGTTTTGAAAATTGTGAGGGTTTCTAAAATATATCATATGATTTAATGGATTATAAATTTGACCTTTTAACCTTTGAATTTAACTAATCGTGCAGTCTTTACTTTTGTGTTCCAAAATCCAAATTGTCACAAAAATGTAAGTGTTCTACTTCctctaacaatacattattgcATGGGGGAACACATTTCTGTgcctttaaaatcaataaaactaaaactgttAATAATCACagatcaatacaaattaaaaaaatatataataagacTTAGGTTTAACATCTTTTGGAAGAAAAGGCATATAACcacataaaaacatgtacaatttccagtacaaaaatattaaattacgAAAGAATGTAAtccaataaaaaatatctaACTCTGTAGCAAACAGGCTTACATGAACAGaaaaatttaacattttcctgAATGCTCAATATcgctttggttttcttttttccccagtaTTCAGAATTTTgcatcattttctttattttaaagagaaattaCAAAGATTGTTTTGgcatgttttcaatgttttacaaaaagacaaaaaaaaaaaagacaaaatgaaagtaACTTTAAGGACAATAAGAAATcttatcaatattttgtttacagcTGCTTCAGTGGTGTTTTTGGTCCCCTAGGAGAGGGTTCTGCTCATGACGTCTTTCAGGGCTCAATTgttccttcttcttcctccatATCTCCCCTTCCTATTTCTCGTCTTTTTAACAGGTTCGAGCTCTTCAAAACTCGCAAGTTCATCAACAGTTTCATCTTCCAGAATGTCATCTTTGTTGACATGCACCATCCTTTTCTTGAATACAGTTCTGTTTCTGGCATCTTCTCACTGTCCAGGACTTCCTTCAATGCATTTCTCAAAGCAAGGGTGTtcctatacagctctggaatgcctacaatgattaaaaaaacaaaacgttgaAACAGTAAGGTATTATCAACCATGTATACGAGTatcaaacaatatttaaacatacagaaTTAGTTACAAACCTTCTACAAAAAAGACTGAATGTTTAACATGTTTGACCCTTTGGAACCGTCACATCCTGTACTTTACTAGAAAGTCATGTGCAAAAGGATTAAAAGTACCTCCAATAAAATGGTGACATCTTACCTGAATCCCAGTCTTTATTCTTGTAGATCCTCTCCATTGAAGCAGTCGTGTTCTGGAGGGAACTCTTCAGCTTTCCTTCCACAACTCTTGACTGTTCTCTGGCAAACAGAAAGCCTTCGCGGGCTTCCAAACTCGCCAGAACCTCTTTGCAATTGCTGATTAAAGAGTCAGCTTGCTCTGCAAAACAACGCAAGTAATTCTCGTAGCTATCTTGTTTGGATCTATGTTCTTCACTAGACAGATGCACCTGGTAATCATCCTTGAAGCAGGTGTCATTGTCTTCCACTGCCTGACCATGCCCCTCGTCATCTTCTAGAGATACAAGGCTCTTCTCATGCCGCTCTTCCTCCTCTTGATCTTCAGAAGGTTTTCTCAAGGCCTTCCTAAACTTCACGCCACAGAGGTCACACTGGGTTCTGTCAATATCAGCCTTGATGAAGTTTTTAGGGGCCATCTCCCTACTCTGTACTTCTCGTGTCTTATCTTGCATTATGGCTATTGTCCTGCCCAGGAGAATGACCTTCCTGATGGCTTCTCTCCAATTGTCTCGGTGCCGCTGTGCCTGCAACGCCTTGAGTAGGTCCTCAGATTCCTGAAGATCCTCCTCAAAAGCATTAACAGGACCCCTGTCCACAGCTCGGGAAACTGGTATGGGATTCAGTATGTAATTGAATCTGGAGACcctgacattttgaaaaaaaatgtccttcagAGAATAGTCCCATTGGCAATCAATGAGATACTCGTCATCCCTTTCTTTCAACAATTCCTGAAGGACTCCCACTACCTCTTTCATATTCCTGGCCCCATTTACTGTCTTGACTACTTCAATCAGCCTCTTGGGGATCTGAGCTGGGTCTTCGATTTTCTTCAGTTCTTCTTCTGCTCTCATGAAATTATCCCGGAGGAAGGGTTCACATTTGGAATCCAGGACATGTCCTACATTGACCAGCATTACcatgcacagcacagcagttcGCTCAGCTTCTCCTGAGGCAGTGTAGGAAGAGTCACTGAAGGCATCAACTAAAACATTGAAATCTTCATTGACATAGCCACACATTACCTTAGCCAAGTACACAAGATGATTCCTAATTTTCCTTATGAATATCACACTGTCTCTTGGTTTAAAAGAATTTACAACGGAAATCAGTGGCTTCTGTGTGAGCATGAAACTCCAGAAATTCAGAAGGGCAATATAGCTCTTGGGAAAACACACAATCATGGTCCTGCAATTGTGCATCAAGAATGCACAGCTCAAGACAAACTGAAACTCAACCAGCATGAGTGTGTTCCCAATGTCTGGAATCATGTGATCTATGCATTTTGTGACTGGCACATTCAGAAAGCGATAAAACGTATGAATGCACTGCTGAGGGTTGTCATAAAGATCCTGAATCATTAGAACAAAAAGCTTAAAGAAATGAAAGTGAATCTTGCTGCCTTTGCGAACGGGCAGCATCCCACGTGACCCGGCCACAGCTTTGCCTTTCCACTGTGCGTTGGCCCTCAGGTCCTGCTGGAACTGTTGCTCCTCTTTAGAAAGCATGCTCTCAAGTTTGCCAGGGAAGTCGGAGGACAAAATGTAAACCTTTGTCGCCTCTAGCCACAGGTCTGTCGATTCTCTTCTGATGACAATTTCCTCATCATTTATCCTCTTTGAAATGTACTGCCTGAGAACCCATTTGTAGCTCTCGAAGGGTACATTCTGCATTAACTTGAGGACCTCTTGACAAGTTCCTTTATTGTTGGATATAGCTCTTTGGTGAAAATGACCTGGAAACACAGTCCTGATAAGAGACTTGCAAAAAGCATATTCATCTCCTGTCAAGATATGCTGAAGATCCTCTGATTCAGGAAGGAAACAGTCTTTGAATAGCAACTTAGCTTGCAGCAGCATCCCATTCAAAGCGGTCAGATATACCTTGGAATGGAAGGCACATTTGACTTCATACTTCTGCAATGGCCTGTGAAGATCAGTGCAGTTCTCCATCTTGCACTCAAGGCCGCACACATGTTTCAAGCACACGTCTGGGAAGGCCTGAGCTTGGGCTATTATCTTCTCTGCACAGTGGCACAATTTCCTTAGCAGCTGCCTCTTGAGAACATACTTCATATCAGTTGTACTCAGCCAGTAGGAAGTATTCTCAGAGATCACCTTGTCTTTTAGGTCTGGGTCACATTCGAACATGAACCGGAGGACTCTGCCCCCTTCTTTCTTTGGGATGCGACACTGGTTGGCCTCCACCTGTATGATCCCACAGAAGTCAAAGCAGGATTTTACCATTTCTTTCTCCTCATTGTTCTCTGGTTTCTCCAGTGCTTTGGCCAATTTAAGAAGCATTTCAATGCATGCCAAGTAGTGCCTTAATTGTGAAACTTGATATAGAGGATGCTCAAGCAAAGAGCAGAGGGCCTCTAATGCTCCCGCAGGGTGGCGTTCCTCCAAAAACCAGTGGAATGCCATTGAGACCATTTCAATATCTTTGTTTAAGAAGCCTTTCAACAGAGTTACCTCTGCTTCTCCATATgacatttgtgtctttttgaaCATCATCATTGCTTCTTCAAGCACTTTACTGGCTTTTTCCTTCTGAGAGTCATCAAGCTCCATCTCCCAGAACTGCACAGAGAGGCGGGCATCAGCCAGGAGGCACTCAGCACGAAACTCAACGTTGTTAGACAATCCTGCAGCCTTATTCAGGTATCCGTGTTCCCTCATCAAGATGGCCGCCTCTTCTTCCCTCCCAAGGTACTTTAACACATCCGCTGCTTGACTTAAGTAACCATTCTGTTTGAAGAAAGCCAGACGGTCATCTAGAGGGAGCTTGGAGAGAGTAGCTTCCATTTTTGccaggtttttttgtttgtgatatTTAGCTGCAGTctccaaatataaataatttttggAGTAAGGCAGCTTGGCTTGCTGCTGGTCACAtctggacaaaaaaaacaaaaaagtgtaaaGAACCATTCTAGTaatgcagatatttttttaatattctttgaTAATGCAGATGTAAAAATTCAAACGGACACATACCTTTCCAAGACATCAGCAGCTTCTTCAAACAACTCTGCACGACAGTACAATTTTATTGCCATCTCATAATCCAAGATTTGATCAAAGCACTTAGCAGAGGCTTTGAAGCATTCTGCCTTTCTATAAAACACAGCCGCTTCCTTCATCTGGagcaaaaagaacaaaaacaaaacaaaatctgacaaattatttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154543 True 4922 TUCP 0.40 2 14941260 14946311

Neighbor

gene id symbol gene type direction distance location
AMCG00002452 LOC104940895 coding downstream 20755 14911455 ~ 14920505 (-)
AMCG00002446 NA coding downstream 91486 14795087 ~ 14849774 (-)
AMCG00002447 NA coding downstream 153312 14761837 ~ 14787948 (-)
AMCG00002448 NA coding downstream 210133 14696398 ~ 14731127 (-)
AMCG00002445 fignl1 coding downstream 258831 14680384 ~ 14682429 (-)
AMCG00002453 NA coding upstream 29795 14976106 ~ 15005344 (-)
AMCG00002454 NA coding upstream 114536 15060847 ~ 15111866 (-)
AMCG00002455 LOC102778215 coding upstream 391776 15338087 ~ 15362568 (-)
AMCG00002460 fbxl2,LOC107742856,LOC107706183,LOC107696556 coding upstream 562137 15508448 ~ 15534012 (-)
AMCG00002463 crtap,LOC106588754,LOC103394375 coding upstream 660730 15607041 ~ 15616265 (-)
G123204 NA non-coding downstream 248261 14691970 ~ 14692999 (-)
G123179 NA non-coding downstream 346718 14588809 ~ 14594542 (-)
G123178 NA non-coding downstream 352502 14587214 ~ 14588758 (-)
G123177 NA non-coding downstream 374193 14566247 ~ 14567067 (-)
G123175 NA non-coding downstream 398240 14542821 ~ 14543020 (-)
G123346 NA non-coding upstream 534833 15481144 ~ 15483716 (-)
G123385 NA non-coding upstream 741144 15687455 ~ 15689341 (-)
G123401 NA non-coding upstream 776622 15722933 ~ 15723137 (-)
G123405 NA non-coding upstream 844294 15790605 ~ 15795172 (-)
G123452 NA non-coding upstream 1177971 16124282 ~ 16127405 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 1287013 13649227 ~ 13654247 (-)
G122862 NA other downstream 1911854 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 2934908 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 3068398 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 3086369 11848470 ~ 11854891 (-)
G123585 NA other upstream 1889845 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 2011851 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 2743697 17690008 ~ 17706289 (-)
G123829 NA other upstream 2976141 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 2987153 17933464 ~ 18041573 (-)

Expression


Co-expression Network