G123295


Basic Information

Item Value
gene id G123295
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 15262949 ~ 15340169 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU154579
GCAACACAAATAAGCTGTCTTGtgtcctttttaaaaagaaaaacgttgACTGGTTGCATTCTCAAATGAATCAAAGATTATTGGATCTATTTATAAACCACCGTATTGCCGTGAATACTGatgaagaaacatttttcatttgaaattgttaaaaatgtcagttttctgTCATTTGTTACTGTAAGGACATTTTACCTGTTGGGTAAACGAAGACGTatacagttaaattattttcataacagAGCAAGGATAGAACCTTTTTCAAAGCAGATAAATcacaaacaatgttttaaactgcATGTGAAAACCAACACACAGGAATTTAGCAACACCTGAGAAAATACGTGCTTCTTTAGGTCTTACTACTGTCCTGAAAGCCacattatttctttttaagtaGTAATTTGCTTTCTGTGTTCCGCCTCCTACCAAACAGGTTGATTATAAATGTCAACAGAAAGCTCACAAAATTGCTGGTTAAGGGGGTGACATGTTGTGGCAATGAAGTGTCCTGACATTTGtgatgtgattttgaaggtgaagaCATTTATTCTCAAACTCCTTTTTGTTGAAAGTGGGGACCAGCTGACCTTTAATGATGTTTTTCAAAGGGTTAATACTGCcattcaagaaaacattttcaattgcatAACCCTTTTCAGTGAACTTTAAGTCAGCAGTAAATAattgaggggaagaaaaaaaaaaactcagataATACAAAGTAGAACCTTTGCATTAACACAGAAAGGGAGCAAGCACACAAACGAAAAGATTTTCTCCCAgatgaaattatttattagtgAAGCAGTCacgattattatgattattttttttatgattttttctGTACATAGTAGTATTCAGGTTATAATAGAAGACTGAATACCTTCTCTCGGATTGCCTTCTATTTTCAGAAGCTAACAGCCTATTAACAGAGCATTCAGAACATATCTCCAGAACACTCAAATTTTCAGAATCGTTGGAACCATTCAAAGGTAGCGGCTGTTGTGAAGGAAAGTAATTACCCTCAATCCAGCTCCTAGTATCTGTACTGTGCTTACAAGAGTAGTGTACACCTTTCACAGTTACATGTTATTTCATTTCTATATCCTGTATGTTTTCTGTGTAATTCTCTTTTGTGGTGTCAATCTTGACTATCATATGCTAGGAACAGTAAGCATTGGGGGAAAGCTTAAATATTAAAGAGGAAGACAAATCCATTGGTATATCATCTAAAGATCTCAAGTCACTCCCAATTGAGTTTTAAGTAACTTCCTCTGTACACTTCCTAGACATTTTCTTATGAAAACCCTTTGCAAAGCCATCCTTAATGAAACAGCTTATCTGCCTTTTATTTAAGCAAAAACGTCAACCAGAAATcacacagaaaaaatgtatgtctgGAAACGACCAATGTACAGTAATCCCTTAATTtgcccagaaaaaaaaaatacatatgattCTATTAACAATAATggaattttatatattttttaatttaactgtgtGATTTACAAGGCATTGATTGTAAGAGAAAATAGCAGATATAGATAACCAACATACAGCTTTAAAGGAGCAAATATAGTCAGTTTTACCGTAGTCTGTATAAAGTATTTCTCAGATGTCAGAATTCCAGTCCCCAAAATAATTTTCTAGAACAAAAACATCTACAGAGaacaaagtttgttttattacagtatgTACCGGCATTCgtcttaagaaaacaaaatctatttgCAAAAGTGAATCTTTGCAGTAAAATTAATGTCAGTCTTCCCTTTGCGAGGGATCTCTCTGAGACAAGAAGGACTCTTATTGACTGAGCATACCTATTTAAATTGGAATTAGTACACAACATTGCATCCGGAGGTCCACCCTAGTGTTATACCAGCAAAACAGTCCTGTAGTGCTATGAGCNNNNNNNNNNaaaaaaaaaaaaaaaaaaaaaaaaacacacaaagcaaataACAGACAAACAATAGAAAGGTATGTTAGAgcagagagaaataataaaattgcatttggaGAAATAACCAAAGTAAGGTAGACAAAAGCAGTTATTGGTCTAAGTGCATCCCCACAGCTGGAGTGCTTTACTACTGGGGGTAGTAGGgctgctggggctgctggggctgctggggCTGCTGCTGGTAGGGGTAAGGGTGTTGCTGGGGCTGCTGGGCCCCAGGAAAAGGTGCTTGTCCTGGAGTCTGGTACATGTACGGCATACCATACTGACCATAAGCATAGGCATTGTAGCCCATGGGCATCGGGACATACC
>TU154580
aaaaaaaaaaaaaaNaaaaaaaaaaaaaaaaaaaaaaaaacacacaaagcaaataACAGACAAACAATAGAAAGGTATGTTAGAgcagagagaaataataaaattgcatttggaGAAATAACCAAAGTAAGGTAGACAAAAGCAGTTATTGGTCTAAGTGCATCCCCACAGCTGGAGTGCTTTACTACTGGGGGTAGTAGGgctgctggggctgctggggctgctggggCTGCTGCTGGTAGGGGTAAGGGTGTTGCTGGGGCTGCTGGGCCCCAGGAAAAGGTGCTTGTCCTGGAGTCTGGTACATGTACGGCATACCATACTGACCATAAGCATAGGCATTGTAGCCCATGGGCATCGGGACATACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154579 True 2284 lncRNA 0.36 2 15337588 15340169
TU154580 False 369 lncRNA 0.44 2 15262949 15340169

Neighbor

gene id symbol gene type direction distance location
AMCG00002449 NA coding upstream 300578 14951038 ~ 14962371 (+)
AMCG00002450 NA coding upstream 316426 14922422 ~ 14946523 (+)
AMCG00002451 NA coding upstream 351633 14878149 ~ 14911316 (+)
AMCG00002443 NA coding upstream 575979 14686068 ~ 14686970 (+)
AMCG00002441 ikzf1 coding upstream 596725 14655853 ~ 14666224 (+)
AMCG00002456 NA coding downstream 32837 15373006 ~ 15378676 (+)
AMCG00002457 NA coding downstream 49047 15389216 ~ 15405384 (+)
AMCG00002458 clasp2 coding downstream 94741 15434910 ~ 15483656 (+)
AMCG00002459 ubp1,LOC107706185 coding downstream 144302 15484471 ~ 15505734 (+)
AMCG00002461 NA coding downstream 239563 15579732 ~ 15606498 (+)
G123197 NA non-coding upstream 570173 14691981 ~ 14692776 (+)
G123171 NA non-coding upstream 893036 14369093 ~ 14369913 (+)
G123169 NA non-coding upstream 896614 14365036 ~ 14366335 (+)
G123043 NA non-coding upstream 1672268 13572519 ~ 13590681 (+)
G123041 NA non-coding upstream 1692138 13566414 ~ 13570811 (+)
G123386 NA non-coding downstream 349432 15689601 ~ 15689963 (+)
G123388 NA non-coding downstream 454239 15794408 ~ 15795149 (+)
G123468 NA non-coding downstream 1145657 16485826 ~ 16489952 (+)
G123525 NA non-coding downstream 1311373 16651542 ~ 16651964 (+)
G123526 NA non-coding downstream 1313330 16653499 ~ 16654884 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 901413 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 2133252 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 2192117 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 2210978 13031759 ~ 13051971 (+)
G122746 NA other upstream 3122484 12133786 ~ 12140465 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 1617992 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 1636119 16976288 ~ 16985906 (+)
G123807 NA other downstream 2575267 17915436 ~ 17984730 (+)
G123989 NA other downstream 3491845 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 3733524 19073693 ~ 19127947 (+)

Expression


Co-expression Network