G123346


Basic Information

Item Value
gene id G123346
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 15481144 ~ 15483716 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU154664
CACACATCACCTTGCACGGTCATTTGAAATGTCTTTACAAAGAGCACGCAGGAGAGCTGCTGTTCAGGTAATGTTATGTACAATTTTATTGCCGGTATATGCACAACTGTAAGCACAGGtctataaatacacaaagtaaCAGAACAGTGAAAACTAGAATGTTACACTcacaaagagaagaaaaaaaaaaaatcgactattagaaaaaaatgtgaCTGACATTGTTTTGCCTTCCAAGtctgtaaatacatttctacaaatTTCTCATTGAAGAAAAAGGACTAACTtttgcaacagaaaaaaaaacaaaaaaatgaaaaaatgaaaagatcaaTGCCAACCCTTTAACCTTCTGAACACTAACTCTCCACACTGACCTTCTTTTACATGAGATTTGTATTTGGATGcttttctctttaaataatAGCCGATATCCGGCTGCACTTGCACACCATGTGAATCACCCCCCTAGAACGGAAATGACATCAAGCACGAAAGCAGCATTTCAGATTGCCGTTAACAGATCAAGGCGGCGGCGCTCTAAAAAAGCATGGAGTGTGGCGGGGGTGGGAAACAGCGGAAGGTCATTCACAAAGAATTGGAGAAACTGACCTGTATCAAAAGTCAGAGAGGTATGCAGTCTGTAGGCCGCAACGTATTCCTTTTGACCTTCTGCACGTACCATGTATGCACTGACACCTGCTGTGTTAGAGACCCCTCCTCCGAATTCAGAGAAAATCCTCAGCTGGCAACAATCACTCATCACACATTAGAAGCTTCTGGGTAACCTGTTAACTGTACACTGAACTGTCAAAACAGAACAACACTATTCCTGCAGCCACACTCCCATGTCCTTTTCCCAGTGCTCAGAGGTGGGAGTGCTACATTGTTCTCAAACAGCTGTGGTCATATGATGGTAAGTAAGATACCAACATGATCCACTGAAAGCACCATagcagaggggaggggggtacaAAAAAAGAGGAATGTTTCCTTGTATATCAGTTAGAGCCATGCAGATGTAATACCACTGAATAAAACGCGAGAGGCATTAAGTTAGTCTTTAACATGTCTATGGTGTAACGCAAGAGCAAAATTCAAAAGCCTCCATATCTGTAGAGCTGGCTTGCACCACACTGGTACAAAAAGTCTTTGAGAGAACAGAGATGACGATAAACTCTTGGGGCGCTTGTCCAGTGAAACCTACCCTGAGGCCTGGTTCTTGTAGAAATGATGGCCGGCGAAGTGAAGCGGACATCCATTCACTGCCCCTGTAAAACCCACTGGGCATTCAGACCAAATCACTCATCCAGAGACGGGCGGCCATTCTACCACACCCTCTTCCTTTCGCTGTGGAAGAACGTGCACCATTCAAGaaaagctaaagAAATTAATCTCAGAGTGACAGTAGCAGTACTATTCTCCAcaaaaaaacagccttttaaGTTTGTAGAAACATGTAACTGTAAATTTCAGAATTAAAACTATTGCCATAACATATTCCTAAGATGTTCATTTATGTTCATGACCtgaatggcattttaattttccGTACTAGAAAATGCAACACATAGGTGCTTATTACAGTTAACTACAAGGCTTTGTGAATTCCCACCTTGATCCTGCAAATCAGCAGCTGGGACATTCACTTTTCTTACAAGTTACCGctgacaaaagacaaaaaccaAAATGTTTCCGGACATTCGGTTAACTCTGTACTCTGTATGGGAGTCAATGAAGAACCGGCGGTACAGTTAAAGACTGTCAGTCAGCTTGCTCGGAGGATGGCTTTGCTGTGTCAGGTCATGAAGCAGGACAGTTGAACTGTTCCACGTCTGTGGCTAGATAAAaccttttatttctttctttatattaatttcaTGATGGATTTCAGCTACCACAacaacaatttttttaattatttttttaaacacattcttaaaaatcaaaattAGAGACTTTATAGATAAAAGCAGTGCTGAATCTGAAACTTTATTCCCCTAAgcttaaaagcattttctggagtttcatcatgtttttttttttagtttttcagtaTTTAACAATGTCTATCTATAACACTGATACGACTTAAATCGGGGAAGACTGAAGGGTACAGGGAGGGctgcaagaaaaaacaaaaccacaacaaaacaaaagtgtgacCAGAATGTTGTCAAAAGCggatttaaatttgatttttcttCCCTTGTAAAACCTCAGTTCCTCTTCACGAATGGACACTTAATACTGTACCCCCTCCAAATCCAAATAACTTAGTGCAACAGTTAACATGCAGGCTGGAGGGAAAGCCAATCCAGTACGGACAGGAAGGGACAGGGGAGAGGAGCGCTGGCATGGCGAGGGGGATGTGGAGGTGATGACTTGGCTTCCCGAAGGCGCGAGCGAGCCCCAGTCTCTGCCGGCTgccggtgggggggggggctaggTGGTGGCTCTCCCTCTTTACGGGCCGGCGATGTCTGCCGTGGGGTCAGTGCCGGCTGAGCCCGTCTGAGCGCGCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154664 True 2526 lncRNA 0.43 2 15481144 15483716

Neighbor

gene id symbol gene type direction distance location
AMCG00002455 LOC102778215 coding downstream 118576 15338087 ~ 15362568 (-)
AMCG00002454 NA coding downstream 369278 15060847 ~ 15111866 (-)
AMCG00002453 NA coding downstream 475800 14976106 ~ 15005344 (-)
AMCG00002452 LOC104940895 coding downstream 560639 14911455 ~ 14920505 (-)
AMCG00002446 NA coding downstream 631370 14795087 ~ 14849774 (-)
AMCG00002460 fbxl2,LOC107742856,LOC107706183,LOC107696556 coding upstream 24732 15508448 ~ 15534012 (-)
AMCG00002463 crtap,LOC106588754,LOC103394375 coding upstream 123325 15607041 ~ 15616265 (-)
AMCG00002464 LOC107714420,LOC107697280,LOC107720166,LOC107661006,LOC107581689,LOC107551731 coding upstream 142482 15626198 ~ 15630089 (-)
AMCG00002470 NA coding upstream 339513 15823229 ~ 15837658 (-)
AMCG00002472 NA coding upstream 355163 15838879 ~ 15923127 (-)
G123204 NA non-coding downstream 788145 14691970 ~ 14692999 (-)
G123179 NA non-coding downstream 886602 14588809 ~ 14594542 (-)
G123178 NA non-coding downstream 892386 14587214 ~ 14588758 (-)
G123177 NA non-coding downstream 914077 14566247 ~ 14567067 (-)
G123175 NA non-coding downstream 938124 14542821 ~ 14543020 (-)
G123385 NA non-coding upstream 203739 15687455 ~ 15689341 (-)
G123401 NA non-coding upstream 239217 15722933 ~ 15723137 (-)
G123405 NA non-coding upstream 306889 15790605 ~ 15795172 (-)
G123452 NA non-coding upstream 640566 16124282 ~ 16127405 (-)
G123488 NA non-coding upstream 996313 16480029 ~ 16480293 (-)
G123263 NA other downstream 534833 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 1826897 13649227 ~ 13654247 (-)
G122862 NA other downstream 2451738 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 3474792 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 3608282 11869607 ~ 11872862 (-)
G123585 NA other upstream 1352440 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 1474446 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 2206292 17690008 ~ 17706289 (-)
G123829 NA other upstream 2438736 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 2449748 17933464 ~ 18041573 (-)

Expression


Co-expression Network