G123405


Basic Information

Item Value
gene id G123405
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 15790605 ~ 15795172 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU154733
CAAAGTGTTTTATTAGCATTatctttctgttcttttttcccctcataaCATCGTGACACAGTGTTACAATGGTATATCGATGCTGGGTACAACAGGACGTCTGTAACTTGTACAGATAACATAAAGCAGttgtttgaaaacatgaaataagttctagaaaaaaaaaatggaagaaagaaCCCAACACATCCCATTGTGTATAGTTCAGAACCTGGTAAATATCCCAAAACAAATTttcaaactcaaactcaaacaTCTCCTACTGACAGCTGGAATGGTTGAGGAGACAGGAGacttagaaaaataacaattgaaCAAGCaagacatcaaataaaataaatatatattccattgTACTACATTCATACACATTTGACAATTAGTGCTGAGGGACTCTTTTAGATTGTATTGACTAACGTGAGTAGGAATTCAAATACTTGAACAGTACATTTCTAAAACCCATCTCAAACCTCATTTCAGTCGATCAGCTAGCACCTCTGGAATTAGCCTGATACAGCGGGTGCAAAAGAGTTCCAACTTCCATacatctgaaataaaaacaacgtACAACTTGATGTGCTTATcgaaggaaaaaacaaaggccGTGATCAAAGATTGGGacttcttttgttttccaactGTAAAAGACATAACAGGTACATAGAAAACAAATTTccccaaaaaataacattgtgatgcttttcactgtattacaaaatgttatctaaaatatttttgtttttgttttaaaacttctacattattttacacacacaaaatgtccatgtacacatacatgtatGAACAATTTAAGCTTTTTACAGGATTACACGTTGGACAAAATGTGGCACATTGCCTTATAAACTATCCTTGaaatattttggtttaaaaaataatgcttttaatcaCTTATGACACAAGTTTAAAACAAGTATGCTTTAGCTGattctgtgtgtggggggggggggggggggagtaagAAAATCAAAAGGAGCTGTATTGCCTCAAAGATACTGTATTAATACTAACATAGTCATGTTTTTTCATGGAACCTGGAATCAGTactttgagtttgtttttcttaaagagAACATCAAGTGGGGAAGgctgtaattgtttttacagAGAAACCAGCCTAAATGCCTTATTTATTAAGAACAATGTGTCCCACTTGTTCACGACAATGTGAACACACCAACACATACTCAAGCACAGGCTTCTGTTTGAAAAgccactttccttttttttctttcggcCTCTAATAAATCCAAACCTGTCACATTTAATTAGTCAGTTTAGGGTGCGGATGAGGATCTGGAAGTTATTTTACTTTCGTCTTAAGACCAGTCACTTTGACGTGTCACGTTTCCAATATTATTAATCCAGAGGATAAACATGACCTTGGCATGCTCAAAAATAAGACATCTAAGGTTACAAAGGGGTTAAATCCAGTTTATAGCACATATTTAATCACTGAGCAAATGAAAAGGGGTCAGAATGGGCAAGTTGAGTGCACAAGCAACAGTGTTTCAAGGTAACAGtgcacagattaaaaaaaaaaaaaaatctctttggAAATACCACTTTGATTTAACAGATTGACTTTTAACGAGGAACCCAacaaagcttgttttgaaagggTCCTCGTCTGACACCCCAGAGTCGCGATTTCAGCAAAAAGAGACCAGGAATATCACAGTGTGATCGTGGGAGGTCGTCGTCAGCTCCAGATATTATTCTTAGCCATTTCAGAATGGGGAGTATTCATTTACTGTTCAGTGGTACCACATGTTAAGAGCATGAATGAAACTGGTACGACTGGCTCAATAGACGTCAAATAAGTGCATGTAGGCGTAGTGGTTAGCAGGGATGGATTAAGGAATGGGAGGCTGTGGGTTTGATCCCAGACTGGCGTATGTCGAAAATAAATTCTATGAGCATGGCTGATGTTTTTCTGGAGGATAAATTGTCTTTGATGTCGTACATCAATGGAGCAcattttttctgtctgtcagcccctttattttccatgtatttatattatgaaACTGACAAATTTCTTAGTGCCACCAGACTCCAGCGGGCCGCTCACCATTTGGTTCAGTCATTGAAGTGGATGGCCGTGTTACATGTATCAACCAGAAAGTGTATTTCTCAGCTATGCAGAACTCCGCACACATGCACAGCGTTCATTCTATTATAATgtgatacaaataatattgttcTTGGCCGTAAATATGCAGTTTAGCTGAACGCCATAGTCCTGTGTTGAAGGAGCATCACCAGGCACTTTCTTTCACTTGAAATAACTGATTTCACTGAAGTTTCCATGTAACTGTCATTTTTTCCCTCACAAACCTTTCAAGACTAAAGATTACATCAAGTATTTCTGTAGGCAGGCACAAGAgctatttaataaaatatacaggtaGGACAGCAAATAAACATTAGAGATTGAATGTGAAGGTGTTAGTAAAAAAGTAAATGCCTGATTTTATATTCAAATCATGCTGACACAGTGCTTTATTATGGAAATAATGTTGATAACTAGAAACAATGAGTTGTGGCTCTAGGTCTTGCCTAACATTCAATGGATCACATTCAATGGAAATTCAGCAATGAGTTCCCGCTGCAGACAGCCGCAGTGCACACAGAGAACATGCAGTGCTGGTTTTATGTGACTGTCAGATTACTACCTCACAAACCACACAAAGGAATACAACAGATCAGTCAAATGGTGACAAACCTGAGGCCAATTCCTTGTAAACAAACAACCAGTCGGCATTGAATCACAGCTTTCTCTATGGGGAGAAATCAACAAAACCCCACAATGCGTTCCAGTGATACGAACACTAAAGAGTGGAGCGGCAACATTCTGgatgctttgttttatatatgtatatatgtattatgaaaCTACTGatttacataattgttttaatatacattgtagTAACTATAGACCTATAATTAGGAAAACTGAgaacttaaaaatatatgaacagcTTTGGAACAGTCACTTGCTTTAATCACAGTATTTAGTCCTTACTCTGAGCCTACAAGtaatattctgttttgtttgggggggtttgtaatttttttttaaataatttaatcatatttatacatttatctgTTATGAAATAAAGTACctctattttattcttaaatgcTAGCAATACAGTACCTTTTTGAAATCACTAGGAACAAATAATGTCTCAGTCCCATTTCAGACACCAGAAGTGTGCCAGTATTTAGGGAATTACAATTATGATTTGCAGTGTGTTTCCAATTTTGATTGTAGACGTGTGTTTAATTACAGTACAACCACAAGAATGTGTTTATATTGATACATAAATGAAGGGATATTATTGATGCTATAGATTATGACTTAATATGAGGAATGAGAGGGGTGTGTAACAAGACACTAGAGGTTGCAGCCATTTGTATCCTAAATACCTCTGTAGGATATAAAAGCTGTGCGGATATGCAAACATACTctaagagaggagaggagagaaaactGGCCTAGGAAAATGAATTTGCTCCCTTTAACACAGGCAGAAAACATCTATCCAATGAGATGGCGTACAGATAAAATGGTcggtactgtgtgtgtgttgcgaAATAATAAAGTACTCTCGTTCTCTTCACAGCTTGAAAAAGATTATGTCTATTTCTATAATTGTTTTCCATTATGTGGGATTGCAATGTaggaatacatttcaaaccACATCCTCGCTGTGTGGAAAAGCGCCCAAACATCGATGGATCCCAGACGAGCGACAAAAAGATAGTCGTAAGGACTCGGTTAAAGTGCTAGCAAGGTCAAGACAAAACTCTTGACATCAGCAGTGTCAACCTGGGAAATAAGCCTTGTttttcactatttatttaaagccCAGCCAGTGTACTGTGCTGCAGATTTCAAACTAATTCATCAACCAAGGCTAAGAAGCTAAAAAGCCAAGAAGCCATAGCTGCTAGAAGACATGGGTAcctttgccaaaaaaaaacaacaacaaaaaaacacaataacaaataaatcatcGCAGTGTGCAGGTTTCACTGACAATTATACCTTCTTCTGAAACAGAAAAGTAACAATACTATAACAGAATAATCTGGACCCAGTGGCCAAAGCAGGGGACTATTGCTTTAGTCATTGTTTCATCATAAAGGATGCATTATATATCCGATACTGTTTATtctaagcagtcattgtttacTGCATTTCAGGGAACTTTCttctattctattttttttttttttttttagttcttttGGTTGTTTAGTTTACTTGagggagacaaaaaaaaaaagtgagcttcagagaaagcatttgaaataGATGCGCTCTCCCAAGTGTGTTTAGAAGTGGAACTCATTCCCAAGGTCTTGGATGGCTGCTCGCCGAACAATGGCCGGGAATGACAGACAGCCGCTCAACCGTCCTCCGTCACAGCCAACTTCTCCTCTCCCGGCTGCTCTGTGGCATCTGGGAAGCAGACACAGTGAAGAAAGGTTACTCACAGTGATGGAGCAAAACACACTGAGCTGGATTACCA

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU154733 True 4568 lncRNA 0.37 1 15790605 15795172

Neighbor

gene id symbol gene type direction distance location
AMCG00002464 LOC107714420,LOC107697280,LOC107720166,LOC107661006,LOC107581689,LOC107551731 coding downstream 160516 15626198 ~ 15630089 (-)
AMCG00002463 crtap,LOC106588754,LOC103394375 coding downstream 174340 15607041 ~ 15616265 (-)
AMCG00002460 fbxl2,LOC107742856,LOC107706183,LOC107696556 coding downstream 256593 15508448 ~ 15534012 (-)
AMCG00002455 LOC102778215 coding downstream 428037 15338087 ~ 15362568 (-)
AMCG00002454 NA coding downstream 678739 15060847 ~ 15111866 (-)
AMCG00002470 NA coding upstream 28057 15823229 ~ 15837658 (-)
AMCG00002472 NA coding upstream 43707 15838879 ~ 15923127 (-)
AMCG00002473 LOC107666842,LOC103361314,LOC100691736,LOC102304281,LOC102192906 coding upstream 146934 15942106 ~ 15950022 (-)
AMCG00002474 NA coding upstream 156061 15951233 ~ 15989035 (-)
AMCG00002475 eomes,LOC105012780 coding upstream 243229 16038401 ~ 16045090 (-)
G123401 NA non-coding downstream 67468 15722933 ~ 15723137 (-)
G123385 NA non-coding downstream 101264 15687455 ~ 15689341 (-)
G123346 NA non-coding downstream 306889 15481144 ~ 15483716 (-)
G123204 NA non-coding downstream 1097606 14691970 ~ 14692999 (-)
G123179 NA non-coding downstream 1196063 14588809 ~ 14594542 (-)
G123452 NA non-coding upstream 329110 16124282 ~ 16127405 (-)
G123488 NA non-coding upstream 684857 16480029 ~ 16480293 (-)
G123489 NA non-coding upstream 686396 16481568 ~ 16483051 (-)
G123524 stt3b,LOC108412618 non-coding upstream 853235 16648407 ~ 16651454 (-)
G123527 NA non-coding upstream 858327 16653499 ~ 16654863 (-)
G123263 NA other downstream 844294 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 2136358 13649227 ~ 13654247 (-)
G122862 NA other downstream 2761199 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 3784253 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 3917743 11869607 ~ 11872862 (-)
G123585 NA other upstream 1040984 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 1162990 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 1894836 17690008 ~ 17706289 (-)
G123829 NA other upstream 2127280 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 2138292 17933464 ~ 18041573 (-)

Expression


Co-expression Network