G123452


Basic Information

Item Value
gene id G123452
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16124282 ~ 16127405 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU154794
GATCACTTCATAACATGCCAACACATACAATAATTGTGCTTTGCCCCTTGAAACAAATAGACATGCACACAACAGAGCAAACAGCCTGACAATATACATCtctttaaatgaaaactgttAATCTTAGAACGTCTGTTTGAACATCTCAGACATCAAGGGGTCCACATGTGGGTTTTTTTAGGCAGTAAAGACAGGAGTCATACTTGGTGTCACTCACTTAACAAAtctgatgtttatttaatttgacaaacCAAATATACTAGTTTTTTCACCACAGATATAGCACTTAATCATCTGCCTTGTCTCAGATAGACAGACTGAACTTCTCCAAATTAAACTAAGAGATGAATGTAAAAGTCAACTtctgacacaaaaaaacacGTTTCACATCAAAAGGACACGTAATGTGTACTTGCATTTTATCAGGGCCTCAGAGGCTAACATCAGTAGAAGCTATTAAATAACAAAGTTTAGTTGAAgtgtcacattttgtttgtgggCTAGGACAGTACAAGAGAATGAATaccatttagatatatcttattgtatgtgtgtttgcattaaCTTAAACCACAGTCAAAACATTCTTATTTTCGGTTTAACAGTTCATTTagcagaacattttttattcttgcttATTAAATAACTTACATCATCTATGTTctgttataaatatttgatataaaAACCCAGACTTTGTGCAATATTTCCATTGGTACAGGGACACAAGAGATTTTAAGTAAGATACTATGCGTTTGTTAGCGCAAAGAGGTAAAAGGCAAACAACAGGAACATGATTATATAAATTTGTATCGAAGGGAAAGTCTACTTTTTCCCCCATGTGCCGGAGTAATTAGCAAAAACACCACCCTTTCATGGCTTTGATGCAAATCTTTTAATATTACTGAATGCTAATTATCACGTTAGCTGGGGTGAAATTAATTTATACTTGCAAAACATACCTGTGGTTTTGGGCTTGAGTTTTAAGAGCAGAATGTCTTATACAGCTTCCTTGGACTTTGTTGGACATTTTCTtcatctaattaaaaaacaagatgcACTACTTGTACTATGCTGGGATGTTAGCCcgaaaataatttgttttctgagaATCAGAggctttttgtgtgtgaattacattcattttacagaaaccaaccaacacacaaacacaaactctgcatgttacaaaaaagaaaaagaaatgtatggAGCATTTGCTCAGACTCTTGCGTTATCAGATTGAGAGATCTGTGTGAACTCTAAATATACTTAACATGATGATGCTTATGTGATGAATATGGGTCCTGCTGTTTAATCTGAATTGGTAGTTGTACATCAGATTCTGTACAAAAACTATGTGCATGTAATGCAACTCAAAGAAAAGGACTTCATTTCCCAACATTTTATCATCTTACTGAAGGGAAAGTCTATTTCTGACCCGGAATAGGAATGCTTTATAAAGACCTTTACCATTTTCTATAACTACATTGATTAGAAAGGCATCTGCTAGCTGAATTTTCTCCCCCAACTGTAGGTTCACCCATTGGTCGCCTACTGAGTGAATCTCGTGGCTACATACTTGTAGGAAGtttctgttgtcttttttttgtaggAATCCCAGTCTTTTCAAACTCTGCCTTTTCTTGCAAATACTCCTGTTTGCATTCTTCATAAAACACAGGATCCTTATagctgaaagaaaTATGTTGTTAGGCACTCCTTCAAGGCCGCGTTCTGCTCTCGACATTTTAAGACCATGAGGAAGCCGCTCTCCTTGCAGCAGTGGTTAAAGGCTGAAAGagattaaataatcaaatagaTATATTAGAGCAATGCCGCGCTGCCTTCTCTCACACGCTTGTCTCTACCACTTCTACATATTAAGAACAGC

Function

GO:

id name namespace
GO:0009055 electron transfer activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU154794 True 1894 lncRNA 0.36 2 16124282 16127405

Neighbor

gene id symbol gene type direction distance location
AMCG00002475 eomes,LOC105012780 coding downstream 79192 16038401 ~ 16045090 (-)
AMCG00002474 NA coding downstream 135247 15951233 ~ 15989035 (-)
AMCG00002473 LOC107666842,LOC103361314,LOC100691736,LOC102304281,LOC102192906 coding downstream 174260 15942106 ~ 15950022 (-)
AMCG00002472 NA coding downstream 201155 15838879 ~ 15923127 (-)
AMCG00002470 NA coding downstream 286624 15823229 ~ 15837658 (-)
AMCG00002477 NA coding upstream 2035 16129440 ~ 16154565 (-)
AMCG00002481 NA coding upstream 440931 16568336 ~ 16582900 (-)
AMCG00002487 NA coding upstream 531493 16658898 ~ 16672579 (-)
AMCG00002488 NA coding upstream 562431 16689836 ~ 16734523 (-)
AMCG00002486 NA coding upstream 625143 16752548 ~ 16753496 (-)
G123405 NA non-coding downstream 329110 15790605 ~ 15795172 (-)
G123401 NA non-coding downstream 401145 15722933 ~ 15723137 (-)
G123385 NA non-coding downstream 434941 15687455 ~ 15689341 (-)
G123346 NA non-coding downstream 640566 15481144 ~ 15483716 (-)
G123204 NA non-coding downstream 1431283 14691970 ~ 14692999 (-)
G123488 NA non-coding upstream 352624 16480029 ~ 16480293 (-)
G123489 NA non-coding upstream 354163 16481568 ~ 16483051 (-)
G123524 stt3b,LOC108412618 non-coding upstream 521002 16648407 ~ 16651454 (-)
G123527 NA non-coding upstream 526094 16653499 ~ 16654863 (-)
G123637 NA non-coding upstream 853426 16980831 ~ 16982646 (-)
G123263 NA other downstream 1177971 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 2470035 13649227 ~ 13654247 (-)
G122862 NA other downstream 3094876 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 4117930 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 4251420 11869607 ~ 11872862 (-)
G123585 NA other upstream 708751 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 830757 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 1562603 17690008 ~ 17706289 (-)
G123829 NA other upstream 1795047 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 1806059 17933464 ~ 18041573 (-)

Expression


Co-expression Network