G123524 (stt3b,LOC108412618)


Basic Information

Item Value
gene id G123524
gene name stt3b,LOC108412618
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16648407 ~ 16651454 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU154874
NNNtttttttttttttttttttacacaaacttgaattttattttgtctaCATTTGAACAGGATTGAACCAAGTCTTCCGcaacaatgtaaaaatgtaaacctgggcgagggaggaaaaaagaaaaacaaacgaaAAACATTCCCAGGAATACAAGTGATTTAAAGAGGGCTGGGTGGGGAGTGCCAAGAGCATAGCTCTGCTAAAACAGGGCaggaaacaaaccaacaaaatccAGAGGGAAGAGATTTAAAAGAACactaatgatacaaaaaaaaaaagaatattgtACATCTTCCCAAACACAATTTCCATGAATAAGGCTTTACCTGaaccatttcatttacatttttaaatcataaaaggtacattttagtttttccccatttttgttttttagtctttttttgttttgttacaccAGCATCtaattttacagttgatggaATAAACATGTTAACTTagaaaaaaagtacaattttataTCTTGTGATAGGATGCGACCATCCCCTTCAAATCTTCATATGCTTCCTTGCCACTTATTAAttgatgtaaataaatattgaacagTATTTCAAGTTCATAAAGTGATGTGCTAGATCAATATGACACCCCGTGCTTAAGTCACTAATGCCCACATTCTGGCATATAGGATGACAGGTTGACatcatttactttaaaaacacaaaggaaaaacacatatataGCAAGTTAGCACAATAAAAGGAGATGACACCCGACACTGAAAAAAattggtaaatatatatattaaaaaaactaaacaaacaaaggaTCAAGAAAGAAATCAAGAGGTATACACTGACTTTGAGAACATAGTAATGATTAGAAGCCCTCAGTTTCCTATGCAGGATGTGATCTGTAGACTTGTCACCTTTTTAAAAGCCAATCAGAGCTCCGATGCTGTTCTAGGGTACAGGTGTGCATTCGTTTCCAGGGGCGGCTTTGATTACGGTTCGTAACAAGCGGCctgctttgcatttcaaatttgCAGAGATATTTTGCCTTTTGTCGGCTTTTATTGCAGCTTCAAAAAACACCCCAAAACTCGGAGGCCCGCTTTAGGAATTTAACAGCAGCTTGTGTGGATGTCTTGTATATAACAGGAGAGCTAACTGATGAAAGTGTGGGCTAACACCCCTGGCTAGACTAAAAGCTTATTCTTGGAAGATGGAAGAAAATAATCTCTCTGACCTGGTACAATAAAGAATTTTCTCTCAAATCAAAATCGGTTTTATCTAGCAGCAGAATATACAATCTAAGTatagtatacaaaaaaaattcaCATTCTTCATGAAATATCCTTATAGTTACTGTAAATCCAGCTAAACAAGTTAttgcattcacttttttttttttcatactgcaTGTTGTAAACAAAATCTGCTGCAATAAAAAAGTCACTTAAGTAGCCAAAGAAATCTGCTTATTTAAAGTCACCACAAAaatccaatatatattatataacccttttagatattttctttatataacatatttacacgtgtggaaaaatgtatgtaatttgttttctttgcaaagaCTAAGGAAACCAAGCTAAGAGAATGCATTGACAGAACAGCTCAATTTCTTTATAAAGTGTTCCTCCATACCGTATATTGTCTTGTCTGTACACGCGTCAGGAACTATAACCCCTCTTAGCGTTTTTattaaggattttaaaaaggtaaCAAGTTTACATGTGCCAAGGATGAAATAAGAGGGCTCTTTGGTGCAATCACTcccagtttaatttattttcattttgagattTATAGGATTATATAATATGTACCACATCATAATTGCTGCCAACCCAGTTCAGCAGCTTTCTGCCTTGCCAGCACATTCAAgtacaaaaaaagtaaatagcGAGACAAAGGTCCTCTCGTTAAACCAATGGATCTCTCTCAAGCTACCTGACCCTGTTCGAGTCTCGGTGGAAACCCGACAGATGACAGTTCTGCTACCCACTTCACTGGGGAGGAGGACCAGAGCTCAAGGCAAAGACTTTCAGGGGTTCGAGATGactgttgttcttgttggttTTCTTGCTTGATTTTCATCTTCATTAAACAGCTTTCTTGTTCAGTTTCTTCCCTTTCTTCAGAGCCAATTTATTCTTAATGTAGCCACGCTTCCTTTTAGCAATCTTTTTTTgataaatacttctgtttggGAATGATATTGGTGACTCGCGGCTTGTGATCCAGTGGCTCCCTGTTCTCCAGTTTCTTGACTTTGTAAATCCTCACCAGCCAGTGCTCGGAGGTGAAAGCTTCCTCCAGGTGTTTGAACTTGATGTCCTTGTTCCCGATCTCGGCATTGCGCGTCCGATCGAAGCCAGGTGGCGTCCGGAAATCCAGCTGAGGACGAGGAAATGGGGAGAGCGTTCAGCACAGTGCACACAGCAGTCTGTAGTGCTGTAGAAGGGCTTCTGGTCTCACTGTGCACTTCAAGTTCAAACTATGAGTTATGCAACACAAGACAGCCTTCTCTCTATTAAACTCATCTAGAGACAGTAAAGAT

Function

symbol description
stt3b Predicted to enable dolichyl-diphosphooligosaccharide-protein glycotransferase activity and metal ion binding activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ix. Orthologous to human STT3B (STT3 oligosaccharyltransferase complex catalytic subunit B).

NR:

description
PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154874 True 2545 lncRNA 0.37 2 16648407 16651454

Neighbor

gene id symbol gene type direction distance location
AMCG00002481 NA coding downstream 65507 16568336 ~ 16582900 (-)
AMCG00002477 NA coding downstream 493842 16129440 ~ 16154565 (-)
AMCG00002475 eomes,LOC105012780 coding downstream 603317 16038401 ~ 16045090 (-)
AMCG00002474 NA coding downstream 659372 15951233 ~ 15989035 (-)
AMCG00002473 LOC107666842,LOC103361314,LOC100691736,LOC102304281,LOC102192906 coding downstream 698385 15942106 ~ 15950022 (-)
AMCG00002487 NA coding upstream 7444 16658898 ~ 16672579 (-)
AMCG00002488 NA coding upstream 38382 16689836 ~ 16734523 (-)
AMCG00002486 NA coding upstream 101094 16752548 ~ 16753496 (-)
AMCG00002491 zdhhc3,LOC103144443 coding upstream 141102 16792556 ~ 16813272 (-)
AMCG00002490 NA coding upstream 172775 16824229 ~ 16831271 (-)
G123489 NA non-coding downstream 165356 16481568 ~ 16483051 (-)
G123488 NA non-coding downstream 168114 16480029 ~ 16480293 (-)
G123452 NA non-coding downstream 521002 16124282 ~ 16127405 (-)
G123405 NA non-coding downstream 853235 15790605 ~ 15795172 (-)
G123401 NA non-coding downstream 925270 15722933 ~ 15723137 (-)
G123527 NA non-coding upstream 2045 16653499 ~ 16654863 (-)
G123637 NA non-coding upstream 329377 16980831 ~ 16982646 (-)
G123642 NA non-coding upstream 343675 16995129 ~ 17050056 (-)
G123646 NA non-coding upstream 423858 17075312 ~ 17075549 (-)
G123705 NA non-coding upstream 582916 17234370 ~ 17238544 (-)
G123263 NA other downstream 1702096 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 2994160 13649227 ~ 13654247 (-)
G122862 NA other downstream 3619001 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 4642055 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 4775545 11869607 ~ 11872862 (-)
G123585 NA other upstream 184702 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 306708 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 1038554 17690008 ~ 17706289 (-)
G123829 NA other upstream 1270998 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 1282010 17933464 ~ 18041573 (-)

Expression


Co-expression Network