G123526


Basic Information

Item Value
gene id G123526
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16653499 ~ 16654884 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU154877
GCCTTTGCATATTTATCCCATGTGAAAGTGTAAATTCCAAGACACCCATAATGTGATTGCCatggcatatttattttaacaaaacaacttataaactttttttcttctttttttgttttactgtataacaaatatGTGTTGCATAGGTTCTACACAGGTGAACGAAGAGTTTGGTTCAAGCTCTTGAATACATTGCAAAGCTGTACAAATTGAGCTAAGtgttacatatacatacattcaggACACTTGATGTCAACCTGCACACAGTATAAACAATACAGAACACGCTCATTCAGACAGATCACAATCCTAAAAAAGATTATAAGGACTggccatccatccatcaatcaattgtctgtctgtctgtctctctctctctttgtccttaGTCTTGATGGTATAGAAAAAGTGCTTCTTTTAGTTAAAATAAGGCAGGTCAGATCTCAGACACTCACTACAAGAGCTGAAGAAATCAGACTGCAATTTGACACTAAAATAAGaagttacaaaatatacaaaattctTTATGACCGGTAAtgacatacatttgtttgtatttgttgagATCGCTTTTCGAAATGTGAAAGCAATGCCAAACTAAGTCTTATCGCTTCTGTTCACCCTGTGACCCTAGTGTGCACAAatctaaaaaacatttcagcttcGGATTCGTTTTTACTGGTGATGTAGGAACTGAAACTGCTTCACATTATAGTATACACTGATCAGTATCACTGTAAAGCTCATCGTTCAACTgaattatgaatgtgttttggATGAggtatttcagcattttataaCAAGCAACCAaggcaaatggaaaaaaaacgaGAAATAACTAAAACTGCAGAATTCATTGTCAATTCTAGTCTAGTTCAACACCCACCGGCTTACAAATACTAAGCATCTACCATTTCAATCATAGACTACCTATGCATTTTAGTATGTAATTAAACCCAGAACTATAATAGTTTTATTCCAGCTGTGCAAACCTTTTTTCCACTTATTACCAGAACCTGCAGCCTTTTCCCACTTGTACTTCTATGCTTTAATATCTCATGGTAGCACTCAACAGGGCCCCAgcatcacattttaatatgctCGTAACAGTAGAAAGTCCtctgaaataacaaaacagtcTGTGCAGGCATGCATGGCTTTCCAAGGGTTAACCGTGCACAGTCTTGTTTAGCTCTTCGGCTTTCAAATCAGCTTATATTCATAAATCGCCGGCGTGCGGCTAAGTGCACTGCAGTCATATATGATGGGCGTGCCCGTGCTCTCTGAAAACTCCTCAACCATTATGTATGAACACTGAAGGGTGCGTCAGCACTGAGCCGGCAGCTACACGGATGCACACGGCCCTTGCGTGGAATGTGGGAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154877 True 1386 lncRNA 0.38 1 16653499 16654884

Neighbor

gene id symbol gene type direction distance location
AMCG00002482 LOC102294068,LOC100692553,LOC101478849 coding upstream 2093 16621519 ~ 16651406 (+)
AMCG00002480 NA coding upstream 83072 16535647 ~ 16570427 (+)
AMCG00002479 NA coding upstream 194288 16343098 ~ 16459211 (+)
AMCG00002478 rbms3,LOC106588200,LOC107713827,LOC107600516,LOC107730162 coding upstream 316780 16270456 ~ 16336719 (+)
AMCG00002476 NA coding upstream 527677 16124380 ~ 16125822 (+)
AMCG00002483 gpd1l,LOC108434205,LOC103034694,LOC105023484 coding downstream 81800 16736684 ~ 16750596 (+)
AMCG00002484 NA coding downstream 99212 16754096 ~ 16769522 (+)
AMCG00002485 tmem42,LOC107394544,LOC103356608 coding downstream 114818 16769702 ~ 16774759 (+)
AMCG00002489 NA coding downstream 124944 16779828 ~ 16790437 (+)
AMCG00002498 exosc7,LOC107693297 coding downstream 158577 16813461 ~ 16819588 (+)
G123525 NA non-coding upstream 1535 16651542 ~ 16651964 (+)
G123468 NA non-coding upstream 163547 16485826 ~ 16489952 (+)
G123388 NA non-coding upstream 858350 15794408 ~ 15795149 (+)
G123386 NA non-coding upstream 963536 15689601 ~ 15689963 (+)
G123295 NA non-coding upstream 1313330 15262949 ~ 15340169 (+)
G123568 NA non-coding downstream 137216 16792100 ~ 16792799 (+)
G123653 NA non-coding downstream 437091 17091975 ~ 17148336 (+)
G123659 NA non-coding downstream 482529 17137413 ~ 17141435 (+)
G123797 NA non-coding downstream 1040976 17695860 ~ 17760195 (+)
G123808 NA non-coding downstream 1271815 17926699 ~ 17940633 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 2291963 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 3523802 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 3582667 13044693 ~ 13070832 (+)
AMCG00002390 NA other upstream 3601528 13031759 ~ 13051971 (+)
G122746 NA other upstream 4513034 12133786 ~ 12140465 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other downstream 303277 16958161 ~ 16960082 (+)
AMCG00002496 NA other downstream 321404 16976288 ~ 16985906 (+)
G123807 NA other downstream 1260552 17915436 ~ 17984730 (+)
G123989 NA other downstream 2177130 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 2418809 19073693 ~ 19127947 (+)

Expression


Co-expression Network