G123642


Basic Information

Item Value
gene id G123642
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16995129 ~ 17050056 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU155030
aaagagagCTGTCTGAAAGGAAACATCTTaacagaagaggaagagaagagtTTCAGCCATGAGGAGCGTCTGCGGTTCAACTGAAAAGCGGCTCCCTGTCCCACGGAGATGATGCGGGTGATCTAGCAACAGGCCTGTAGGACTTCCTGTCCTGAAGGGGTCTCTTCACACGCCTTGGGGGGGCACTAAAGCATCTTCATTTCTGGacttaaaaactacaaaacaaacaaacaatctggAACAATCTATTGACTGTAGCAGGCAGGATCTTAAGACCGCTTTTCTGCCAAGTCATTGTTTTGTGAATTGTTTATAAAACCCGACTGCATTTCAGTGGTAAGTATTAGGCAGCTGACATTGTGGTGTCCTTACAAGGCCTAAAAACAAATTGCACCCTTAATTCGCGGGCAATAAGATACAGGAACTCTGAAGCCATTGGTCATTTTACACCCTGAGTTTCTTTTGAAGTCCAGGACAAAagtaaaagtgtgtattttggggttaattttctgtatttcctcACTGCAGGTGATGGACCAATGAACTGCTGGTGTATTCTGCACAGCTGCAGTGCACCGTGGGATATGGTACGATTTGTACCTTGTTATTTACCTAACAGAAAGTTAAAGAATTGTAAGCAGGCAGTATGTTAAAACAACTCCTGTCCTATCTTCTGCTGTTCTGTGATTGTATTTCAATGAGAGCGTTACACATTATTGTCATTTGTATCACACTATTGCTGGGTCTTGTAGACTTTCATAATTCGGTTTTGGCATCTGCTATTGTTGCTTTGCTTTGTATATGCTATTGAGTAGAGATGTGATATCCCAACAGCAAATTGTAGGTTTTAATCTAGTTGAACATTAGGGGTGTAAATGTTACTGTTCATAAAGCCTTGTCTTCTATGCATGCCACCAAGCAAAATAGTTCTGTTTTTAAGGGTGTCTGAGTTTATGTTAATGAAAACTACAgtaatattaaatgtgtaacGCAGATATTTCAACCATTTTAGCAGAGAAACGGTTAACTTTCTGTATCACGTTCAGCACCAGTCTTTGGACACTTTCCCTTACTGGTGCTTTATGTTCTCTTCGCTGTGGTTTCATTCTGATCACTGACACAGTCAGCCTGTTTCCCGTTTTACACATCCTGGAGggatttttcttcctctctgcaTTTCTATGAAGTAGCTTGGTCACGCTTTTTTGCACTGCGTTCTGTGAATTCAGAtgtgaatttaaatgttatCAGAGATGAATGctaaatgtaatagtttttaATTGCTGGCTCGCCTGCGGCCTACTAGCTTTTAGCCTCAGACTTGAGGTACAGCCcatttatgtttacatttatatttggcAGCCCTGTGCAGCATATAAGTTGTATAGTCTATATTTCCTGGTGTTTCAGTTGCTGGCAACtatttctctgtgtgtatgtatatagatgtatgaatacatatgaaaataaatacatctatccCATCCTCATCATCAGTCTATATCgacccactgctggatgaaggcctccccaagatttctacacttgttttgatctattgcttctcttttccatgtcacacctgcaaagttcaTGATTTAGTCTTCTCATCTTTAATGTGGTcactttcttgttgttttttatctCTTGGGATTTGTTCtataacttcctttgtccatctttgatctcttcttgcaatgtgtccagcccactgccattttaacattttcactccttcaattatgtcaaatattttggtttgttctccaatcaatttataacttttttgaaatgtgtttttctggattttgttgttattctgtctctcactgttaaaatacacctaccattaaaattat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155030 True 1859 lncRNA 0.39 2 16995129 17050056

Neighbor

gene id symbol gene type direction distance location
AMCG00002492 tmem158,LOC102794155 coding downstream 147013 16847424 ~ 16848116 (-)
AMCG00002490 NA coding downstream 163858 16824229 ~ 16831271 (-)
AMCG00002491 zdhhc3,LOC103144443 coding downstream 181857 16792556 ~ 16813272 (-)
AMCG00002486 NA coding downstream 241633 16752548 ~ 16753496 (-)
AMCG00002488 NA coding downstream 260606 16689836 ~ 16734523 (-)
AMCG00002504 NA coding upstream 13351 17063407 ~ 17071925 (-)
AMCG00002508 mturn,LOC107572558,LOC107559763 coding upstream 30448 17080504 ~ 17090314 (-)
AMCG00002509 eaf1 coding upstream 42850 17092906 ~ 17097083 (-)
AMCG00002510 capn7,LOC107705521,LOC107755679 coding upstream 87120 17137176 ~ 17158023 (-)
AMCG00002514 NA coding upstream 133345 17183401 ~ 17185908 (-)
G123637 NA non-coding downstream 12483 16980831 ~ 16982646 (-)
G123527 NA non-coding downstream 340266 16653499 ~ 16654863 (-)
G123524 stt3b,LOC108412618 non-coding downstream 343675 16648407 ~ 16651454 (-)
G123489 NA non-coding downstream 512078 16481568 ~ 16483051 (-)
G123488 NA non-coding downstream 514836 16480029 ~ 16480293 (-)
G123646 NA non-coding upstream 25256 17075312 ~ 17075549 (-)
G123705 NA non-coding upstream 184314 17234370 ~ 17238544 (-)
G123788 NA non-coding upstream 610011 17660067 ~ 17675110 (-)
G123824 ctnnb1 non-coding upstream 761462 17811518 ~ 17815466 (-)
G123845 NA non-coding upstream 1001041 18051097 ~ 18052332 (-)
AMCG00002503 NA other downstream 20828 16958162 ~ 16974301 (-)
G123585 NA other downstream 155407 16836156 ~ 16839722 (-)
G123263 NA other downstream 2048818 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 3340882 13649227 ~ 13654247 (-)
G122862 NA other downstream 3965723 13028197 ~ 13029406 (-)
AMCG00002524 NA other upstream 639952 17690008 ~ 17706289 (-)
G123829 NA other upstream 872396 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 883408 17933464 ~ 18041573 (-)
AMCG00002584 NA other upstream 4596999 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 4851236 21901292 ~ 21902597 (-)

Expression


Co-expression Network