G123653


Basic Information

Item Value
gene id G123653
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17091975 ~ 17148336 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU155044
TATCAGtagtacataataataataataataataataataataactaaaacatttgacatggTTAATGAAAAGCTTATTAACAAGGAACCTGGAATTCAGATATGATACATTATGAATGTAAGGGATGCATCAAATTGAGCAATTGTTGCAGATAAACACACTTGTAAGATATAAACTTTCTATATCACTGAGGAATACCCATCATTGTAATCCTGTGTTTTGTCCAAACCCTTGTAGAATTCTAGAATCGAGAATATGTTAATCGCTCCTATCTATACAAAAATGCACTGATATACGTACTATGGTTTGAAAACTACACTcttcattatttttgctttctttagtttcttttcaatactttaaacaatacatcttaacatttaagatgcatttaCAGGGAATCAGGCCTAGTATATATAAAGCCTAGTTTATTTAGCAActgattatgtatttgttgtaaaaattaaatggatacatttgatttagttttttttttctacaacactaaaacaaaaatttGCAGGTCTATAAAGTAATGGAATTCCATTTTATAGGTTAAAATGTATCtcttcaaattacatttaatggtCTTTTCATTTAAGTCCaaagcttttaaacattttgtttctcctACACAAGCATATTTGATAATTGACCTGTTTGGACGACATTCAGGATACACCTGCCTGCTTTTTGACAGGAATTATTTTTGAGATGAAAgcgttttaaaaaaataagtgattCCATAAAAGAATATCAGAGCTCTTATAATGTACACACTCTTGTCACTTCAGGGATACGTATGGGTAGTAATTCTCAATTCTCAAATTCTCATGTTTACTTATACTGTTTCTAAGACAATACCAAAACAATCAGGATGAAATTAAATTCAATCATGTAAAGtgctttgaggaaaaaaaaacaaaaaacaccagatTGTACGTCAAATTAACATTGTGGAACAcgtttagaaatatatatatatatatatatatatatatatatatatatatcttttttttttttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155044 True 1030 lncRNA 0.27 2 17091975 17148336

Neighbor

gene id symbol gene type direction distance location
AMCG00002501 NA coding upstream 75729 17003048 ~ 17016246 (+)
AMCG00002502 NA coding upstream 99020 16987102 ~ 16992955 (+)
AMCG00002495 sacm1lb,LOC106579366,LOC106605518 coding upstream 135405 16937361 ~ 16956570 (+)
AMCG00002499 limd1,LOC106579350,LOC106605519 coding upstream 158457 16925317 ~ 16933518 (+)
AMCG00002493 limd1,LOC107756905,LOC106605519,LOC106579350,LOC107688969,LOC107598949 coding upstream 177023 16906745 ~ 16914952 (+)
AMCG00002513 NA coding downstream 56127 17204463 ~ 17248752 (+)
AMCG00002512 NA coding downstream 122245 17270581 ~ 17272452 (+)
AMCG00002517 NA coding downstream 136735 17285071 ~ 17291512 (+)
AMCG00002511 NA coding downstream 174299 17322635 ~ 17353428 (+)
AMCG00002528 atp2c1,LOC107592020,LOC107668304,LOC103369286 coding downstream 241609 17389945 ~ 17415896 (+)
G123568 NA non-coding upstream 299176 16792100 ~ 16792799 (+)
G123526 NA non-coding upstream 437091 16653499 ~ 16654884 (+)
G123525 NA non-coding upstream 440011 16651542 ~ 16651964 (+)
G123468 NA non-coding upstream 602023 16485826 ~ 16489952 (+)
G123388 NA non-coding upstream 1296826 15794408 ~ 15795149 (+)
G123797 NA non-coding downstream 547524 17695860 ~ 17760195 (+)
G123808 NA non-coding downstream 778363 17926699 ~ 17940633 (+)
G123833 NA non-coding downstream 902676 18051012 ~ 18052338 (+)
G123916 NA non-coding downstream 1356552 18504888 ~ 18509774 (+)
G123943 NA non-coding downstream 1406149 18554485 ~ 18556562 (+)
AMCG00002496 NA other upstream 106069 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 131893 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 2730439 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 3962278 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 4021143 13044693 ~ 13070832 (+)
G123807 NA other downstream 767100 17915436 ~ 17984730 (+)
G123989 NA other downstream 1683678 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 1925357 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 1981731 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 3093512 20241848 ~ 20333030 (+)

Expression


Co-expression Network