G123705


Basic Information

Item Value
gene id G123705
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17234370 ~ 17238544 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU155101
ATGGCTTTAACTAATAGGTAACATCAGTGAATCCCAGTACCAAGATGTAGCAGTACCCACATCAAAAGATTCTGTGGAAAATATATCTCAGATAATCCACGTTTTCCACGTTCAGTCACTGTCTAGTTTCATACTGACACAAACAGACCACAATATTGACATTGAGGAAAGCaggatttatttgtatgtatttatttaaaacaaaagctccaaagatttaaaaagaacGTTTTAAATAAATGGCCATCAATGTAGTTTTAACATTCATGGGAGGATATTTAcatcatatatgtatatgtatatttaagtgtgtgatatttaatattaatattaatattaatcagaTCAGTcaaatttcactttattttggaCATACTTAATATATGGTTTTGGTAGTTGGAGgtctttcaaaaatgtaaactgtaaacataGAATGGATGTTAAGTCAAACACTgtactttaaacattttaattaatagcaCCATGGATAACGATACCCTACAAACCCATAAAATAACATGGATTCAGTTCAGTGGACAAGACTGATGGCATGATTTGAGACCACTGGCTTTCAATAAATATAACCTTCATGATTTCCAGTACTCTTTTATCAGTCCTTATCCAAATTGGGCACTAGACTATTTATGACAAATCTAGAGGACACAAAGAATGACAAAGCTATTTAGTAACGCTCCACCTGGAAATCATTCCTATTAATGTACATCATCATGagcatttttaatgaaatgttcatTTCACATACAAGTAAACCTTAACTAATAATGTGAACATATTTCTTTGTGCACCAGTATTATTTCCCcattaatttcaaatcaaattccTACAAATCATCGCCTCCTTCACCACTTTAGTGACCATATTATTCTGTcgttctatttttattttatttgaggtaCTTGTTAATAATGATACAAGGCATATGAAGTATACATTAAGCACTTTCTACCAGGGAAACTGCTGATGAAATGTTCTACTTATGGATCACAGGCTGTGATATTTTATCCATACTTTTGTGATGCAACAAATCCAGTTTGGAAACAAGAACGTTTGTAGGGCTAAAGAAGCCATCTAATCTGTGTTACCCAGTAACACACCAGTTCTACggtacttttgtttttcactaaCACATAACAACTAAATTCTACACAAAATGCACATCTGATCAACCAGAGTTAAGACAGAGGCTTTCACAGTCCTCCTGGGTTTCAAATTTGTTCTGGTTTCCGCCGCAGCCACCGTACCAAAACCTCAAGCACAGGTTTTGCTCAGCATCGAAGTGCCATTTAAGGGTGAAGTTCCGGCAGTCTCCCTCATCTAATGTGAGACGGCACACGACTTGACTTTGAAGTTCCTTCTGTTGGGTGTCTGTAACTGGTtTTGCATCTCCTCTGCCTTCACTTCCACCATAGCCCACTTCTTCTGTATATTCTTCAACCCCTTCTCTTAgctcttcatcctcctcttcctccacttcATAATTGTATATCTTCTTCTCCCCTTGAATGTCAGGTTCCTCTGTGATCTCTTCTTCCGGCTCCTCTGTTATGGTTCCAGTCTCCTCTGTGTAACTGTAATATTCTTCTTCTGGAGCTGGAGTTTTAACTGGGA

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU155101 True 1629 lncRNA 0.36 3 17234370 17238544

Neighbor

gene id symbol gene type direction distance location
AMCG00002514 NA coding downstream 48462 17183401 ~ 17185908 (-)
AMCG00002510 capn7,LOC107705521,LOC107755679 coding downstream 76347 17137176 ~ 17158023 (-)
AMCG00002509 eaf1 coding downstream 137287 17092906 ~ 17097083 (-)
AMCG00002508 mturn,LOC107572558,LOC107559763 coding downstream 144056 17080504 ~ 17090314 (-)
AMCG00002504 NA coding downstream 162445 17063407 ~ 17071925 (-)
AMCG00002516 NA coding upstream 68722 17307266 ~ 17308556 (-)
AMCG00002515 pik3r4,LOC107556101,LOC107588487 coding upstream 116106 17354650 ~ 17371962 (-)
AMCG00002518 NA coding upstream 177593 17416137 ~ 17423894 (-)
AMCG00002519 mrpl3,LOC107748644,LOC107688359,LOC107710340 coding upstream 280461 17519005 ~ 17530234 (-)
AMCG00002522 NA coding upstream 306296 17544840 ~ 17553514 (-)
G123646 NA non-coding downstream 158821 17075312 ~ 17075549 (-)
G123642 NA non-coding downstream 184314 16995129 ~ 17050056 (-)
G123637 NA non-coding downstream 251724 16980831 ~ 16982646 (-)
G123527 NA non-coding downstream 579507 16653499 ~ 16654863 (-)
G123524 stt3b,LOC108412618 non-coding downstream 582916 16648407 ~ 16651454 (-)
G123788 NA non-coding upstream 421523 17660067 ~ 17675110 (-)
G123824 ctnnb1 non-coding upstream 572974 17811518 ~ 17815466 (-)
G123845 NA non-coding upstream 812553 18051097 ~ 18052332 (-)
G123876 NA non-coding upstream 967124 18205668 ~ 18206132 (-)
G123926 NA non-coding upstream 1230690 18469234 ~ 18469607 (-)
AMCG00002503 NA other downstream 260069 16958162 ~ 16974301 (-)
G123585 NA other downstream 394648 16836156 ~ 16839722 (-)
G123263 NA other downstream 2288059 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 3580123 13649227 ~ 13654247 (-)
G122862 NA other downstream 4204964 13028197 ~ 13029406 (-)
AMCG00002524 NA other upstream 451464 17690008 ~ 17706289 (-)
G123829 NA other upstream 683908 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 694920 17933464 ~ 18041573 (-)
AMCG00002584 NA other upstream 4408511 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 4662748 21901292 ~ 21902597 (-)

Expression


Co-expression Network