G123788


Basic Information

Item Value
gene id G123788
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17660067 ~ 17675110 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU155202
tccATGTCATCAGTGATTAAGTTTATTGTTAAATGTGGAAAGAATGAAAACGTTACTGCACTACACATACAAATCAGTACTTcacatattattaaaaacagtttcactgaatattcaaaatgaaaccCTGTAAAAAACATGAAGGCACTTGCTGCTGACAGCTacattggttttaaaaatatcctACAGTGAAAACTAATTTCAAAGGCATATCTGGTATCAAATGTAGCCCAACAGCTCTGCTGCAATGAAGTTACAAAATAGGGGTTACATTGGACTTATTGGAGTATGGTGCAAAGTTACTCTTTACAATAAGACTATACAAAGATTGATTGCTTATAACAATTGTGCACGGCTTCCTCGCCCCTTGGCCTAAGCTTGTCTTCCTACAGCACCACATCGCACCTGCTGATCCCAGTagcctccacacacacacccctttaCAGATTCTCCTTCCACTGGGCAAACTGGATGAGGGGGTAAGGGATAAGTCCTTAGCAATGTCCTCTCCTTTCCCCAGTGTATCAGATTGCCACATTCGTCCCAGGCTGCCTTGTGTGTGGAGTCCACTGGTTCTCTCCTTATATATAAGAATTGCACCTATAAAAAGATGGATGTCCTGGAAATACACACAGAATGATCACAAACGAACAAAAGGACGCCTGTCTCATATAGAAATCATCTCCATCAACTGGTGGAGAAAAGGGCAGCCATGATGGATATCATATTGTTAACTTTGGCTTCAGCTGGTGTTCAAGAGCCTTTCAGGAAACATCATCCTAATGCTGTCAGAGTGTCTCATGTACTATTGCTGCTAGAAATGACAGatacagtaaattattttaaaatctacacTTGACAATCATTCCACGATGGCTTGTCTAACAAAGGAAATGCCCTACAAACCCCTTATACTCAGTTCCCCAAGGGCTAATGGATTACAAAACATTGGATATATCAAATGTACAGGAACCTAAACACCAAAATCACATCCCTGGcacatgaaaaaaatagaaaattatatacagaaaaaaaaaaaaatagacattgTTTCCAAACAGAAGTACTGCATATTAATaagaaaaaaaaaaaaaagacgtgCCACATACAAACAGTGCAACCATACACGCCCACTGCTCagaataaatagttttattaagTGATTACAGACCTGATCAATAGAAACATCACTACAATATCTGAAATTACAGGACCAACCATCTTCCAGCTTGAGAACTGTACATTCTTCAAGTGAGACACACCACTGCCTTTTCCTTCTGTCCTTACGCAGCAACTATAGGATCTCTAGTTGTACAAACAATGCAACCTATTTGCCACTTCAGTGCCATTAATCTAAAAGATTAGTTTCCAAGATAAACTGGCCAAAATAAAATCCACGTATGTAGTGCATCCTTCAATTATATTGCATGTTATTAGATAAACAACCTCAGATGCGCATGTTACGCACAACAAAGGGGCATTTTAAGCCTTTTCAGGTGCATTATAGCTTTTCCAGTGTCTGGACACAACATTGTAATTCTTGTCCTACAATGACCCCTTAAAGACCAggtttgtaaattgcattatgcttatttcagattttaaatgtaatctttaaaaGTATGCCTTGAGGTTTGATGTTCCCTTTTCTTTCCTGGTTAATTTATTCCAGTTGCTGCTTTATGGTCACCTGGACATGCATTTCCAAGTCCATCCATCCTGAGCTAAAACTTTACACTGGTCTTTCAAGGGATAAAAGTAGATCTGATCCTAATTTGGACATTTCCAAACAGGCAGCAAAAGAAGACAAAATTAGCTAACCATCAGCTTTATTCTAACAACCAAAGTAAACAATGTAAACCAGATGTAGGAGCCGTCCCACCAGTGCTCATGTTTAGCGAGACGTCCATACCCCGTTCCTTCTGTGTAGCCATTCTGTGACCTTTTCAGAATTCCCTTACGGACCAAACAGTAAAGAACCAAGTACGGAAAGGTCCACCAGTCCTGTAAACATgaagtctttgtttttttgtttttgttttgctctgtgattcacaccaaaaaaaaaaaaaaaggggagaGGCAGACTGGGGTGGGATGATGAAAGGGCTTCTGATATCGTCTTCAGGATTCTTCACCGTCTACTGGAGATGTCGGGGTAGTTGGGGATGATGCTTCCATTTCTGATCTACTTGAAATCCGATCCAGTTCTGCCTGCACATCTGTTAAGCCATGCTTTTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155202 True 2243 lncRNA 0.39 2 17660067 17675110

Neighbor

gene id symbol gene type direction distance location
AMCG00002520 LOC107710314 coding downstream 53118 17598649 ~ 17606949 (-)
AMCG00002521 cpne4a,LOC108425151,LOC107710314,LOC107602385,LOC107654757 coding downstream 87078 17558828 ~ 17572989 (-)
AMCG00002522 NA coding downstream 106553 17544840 ~ 17553514 (-)
AMCG00002519 mrpl3,LOC107748644,LOC107688359,LOC107710340 coding downstream 129833 17519005 ~ 17530234 (-)
AMCG00002518 NA coding downstream 236173 17416137 ~ 17423894 (-)
AMCG00002523 NA coding upstream 2912 17678022 ~ 17685297 (-)
AMCG00002530 NA coding upstream 163469 17838579 ~ 17857068 (-)
AMCG00002531 NA coding upstream 200895 17876005 ~ 17902810 (-)
AMCG00002532 NA coding upstream 383422 18058532 ~ 18062065 (-)
AMCG00002536 trim71,LOC107657583,LOC107551222,LOC107723073,LOC107601676,LOC107704101,LOC107751884 coding upstream 497021 18172131 ~ 18182627 (-)
G123705 NA non-coding downstream 421523 17234370 ~ 17238544 (-)
G123646 NA non-coding downstream 584518 17075312 ~ 17075549 (-)
G123642 NA non-coding downstream 610011 16995129 ~ 17050056 (-)
G123637 NA non-coding downstream 677421 16980831 ~ 16982646 (-)
G123527 NA non-coding downstream 1005204 16653499 ~ 16654863 (-)
G123824 ctnnb1 non-coding upstream 136408 17811518 ~ 17815466 (-)
G123845 NA non-coding upstream 375987 18051097 ~ 18052332 (-)
G123876 NA non-coding upstream 530558 18205668 ~ 18206132 (-)
G123926 NA non-coding upstream 794124 18469234 ~ 18469607 (-)
G123961 NA non-coding upstream 909599 18584709 ~ 18585930 (-)
AMCG00002503 NA other downstream 685766 16958162 ~ 16974301 (-)
G123585 NA other downstream 820345 16836156 ~ 16839722 (-)
G123263 NA other downstream 2713756 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 4005820 13649227 ~ 13654247 (-)
G122862 NA other downstream 4630661 13028197 ~ 13029406 (-)
AMCG00002524 NA other upstream 14898 17690008 ~ 17706289 (-)
G123829 NA other upstream 247342 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 258354 17933464 ~ 18041573 (-)
AMCG00002584 NA other upstream 3971945 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 4226182 21901292 ~ 21902597 (-)

Expression


Co-expression Network