G123808


Basic Information

Item Value
gene id G123808
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 17926699 ~ 17940633 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU155224
CCAGGTCAGATagccgctccttctcatccctggcccctaaatggtggaacgaactgcccaccgaagtcaaaacagcagagtccttgacctcattctggcacttactcaagacgcatctttacagacagtacttgtaatattagtccttttatccccgttagatagcacttcacagtttttattatgcttactgcattcttgattgttttcctccttgctccctttcccacaacccctgactgtgaccctacatcttgataGCGCTTAGCTTTCAcggtccaggatgtaggacctcacttactgtacttgtgtaaattgtaaattgtaatttgtaaaatgtattatcttgaattgctatgttttagttaaattgaatttgtaatgattgatgccttgtacttactgtatttttgcacttatgttgtaagtcgccatggataagggcgtctgccaagaaataataataataataataataataataatcctgatAATAGAGCCCTGCGGGGTACAGCACACCTGCACAATCGTAATATTTTCTCCAAAGAATGTGTGTACTTTatggccacactgacaaaagaTCTAATGCAGAAACCAGtgctaaatgtttaaatatacatgttaaatatgtgaTTGTGTTACACAGATAGATTTACACTTTTACCATtgtttaatatgcatatttatccACCCAATGTCCAGTGCATAAACATCATACACTTGGatgtgtactggcttgcaagttaggCAACCGTATATGCCTGTAGCAATATTCCATAAGTATCATCCAGACTTTacctatttgtgtaaatattcataatagcaGACATTTTGTGTTTACACTACAGCCGCTTTGACAACAGTGGCATTTGATACAGGGTTTGTGTCTTAAGTCGTCTTCactaccatatatatataaagagagagagaaataaatgtacatggATTATTGAAA

Function

GO:

id name namespace
GO:0008410 CoA-transferase activity molecular_function
GO:0008260 3-oxoacid CoA-transferase activity molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction

RNA

RNA id representative length rna type GC content exon number start site end site
TU155224 True 955 lncRNA 0.37 2 17926699 17940633

Neighbor

gene id symbol gene type direction distance location
AMCG00002527 ctnnb1,LOC107570993,LOC107701997,LOC107748497 coding upstream 114972 17806735 ~ 17811727 (+)
AMCG00002525 NA coding upstream 251589 17661879 ~ 17675110 (+)
AMCG00002526 dync1li1,LOC107654754,LOC107706262,LOC107591989,LOC107688360,LOC107710339 coding upstream 265526 17652475 ~ 17661173 (+)
AMCG00002529 NA coding upstream 455407 17445920 ~ 17471292 (+)
AMCG00002528 atp2c1,LOC107592020,LOC107668304,LOC103369286 coding upstream 510803 17389945 ~ 17415896 (+)
AMCG00002535 LOC107751889,LOC107704104 coding downstream 57413 17998046 ~ 18050916 (+)
AMCG00002534 cnot10 coding downstream 204579 18145212 ~ 18161564 (+)
AMCG00002540 LOC106606077 coding downstream 397123 18337756 ~ 18346198 (+)
AMCG00002546 pomgnt2,LOC106605419,LOC106579937 coding downstream 516418 18457051 ~ 18458790 (+)
AMCG00002553 NA coding downstream 859227 18799860 ~ 18810379 (+)
G123797 NA non-coding upstream 166504 17695860 ~ 17760195 (+)
G123653 NA non-coding upstream 778363 17091975 ~ 17148336 (+)
G123659 NA non-coding upstream 785264 17137413 ~ 17141435 (+)
G123568 NA non-coding upstream 1133900 16792100 ~ 16792799 (+)
G123526 NA non-coding upstream 1271815 16653499 ~ 16654884 (+)
G123833 NA non-coding downstream 110379 18051012 ~ 18052338 (+)
G123916 NA non-coding downstream 564255 18504888 ~ 18509774 (+)
G123943 NA non-coding downstream 613852 18554485 ~ 18556562 (+)
G123950 NA non-coding downstream 643536 18584169 ~ 18586027 (+)
G123993 NA non-coding downstream 903735 18844368 ~ 18861644 (+)
AMCG00002496 NA other upstream 940793 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 966617 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 3565163 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 4797002 13125378 ~ 13129697 (+)
AMCG00002388 NA other upstream 4855867 13044693 ~ 13070832 (+)
G123989 NA other downstream 891381 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 1133060 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 1189434 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 2301215 20241848 ~ 20333030 (+)
AMCG00002622 NA other downstream 5046912 22987545 ~ 22990164 (+)

Expression


Co-expression Network