G123833


Basic Information

Item Value
gene id G123833
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18051012 ~ 18052338 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU155257
tataaaaccTAAGCAGTAGATGCATTTAACATAACAATATgtcctttttcatgttttttgtgttggttttttttgttgGAAAAGTTTATTATGTCCAACTATATTAATATATGGGTCACAGCAACACCGGTTTTGTTGAAGTTTCACTGAAAGCTAAAAGTAATTCGCTGGTGGGGGTGGTAGACTCCCAACTGCTAGTGTGCTTGCACAACATTTGCAGACCAAAAGCTGCAACCAAAAACCAAGGGAAGAGACGCACGGGAGTCTGGACAGGAGTGCTGCAGCGATGGGACATTTGAAgtgaatgaatgtgtttttaactcAAACacaagcttatatatatatatatttttgtgatagaccaatatactttttgtttatatatatatatatatatatgtatatatactagtTTAACTTTGAGGAAATGCAGTTGTCAAAGACTTGAATTAGGGGCAGAAGAAATTAAGTTGATAATCAACGATAATCTCCATTTTTACCATTGAGGCCTATGTCTGACAGCTCTTGTGTGAGGCCTGTTTCCATTGATGTAGGAGCGGatagtcatttattttagtggTACAGAAGCACCAGTATAGATTAACCTGAGCGATTTTCCTTGTGAGGACAGATTGAAAGCATCTGATACTGTAATGTTAGCTTTAAAGCCAATTTTTTGTAAGATGGCACAATGGCAAGCTTTGACCTGTGTATTAGTGCCTGAGCATAAGTGTTTCAGCATCTGACTGACTTAACATTGGTCTGCCAAGCCATGACTGAAGTATCACTCGCACTGAGGGTTTATTGTAAATAGTTCATGATTTGATCTGTTTTAACCTAGTTCTACATGTGGCGAACATGATATAATAGatcttgtatatattttgaagcaAAGCACATGGAACAATAATGCATGTGTCTTAATGAGAAAAAAGCCTATTTATTCTTTACTTTAGCATTTTAgttaaaaaactaacaaacagttgATATTATTTGCTGTTGTATGTGTGCACTTCTTGTCAGTAACTTGAATAtctcatttgaatgtattaacaGCAGATATGTCcataactgtttttatttacacaatggATTTTACTCCATTTCACCATAAAGGGAAAGTATGCTacttgtaaattgtaaatggtATGTATGCAATAAGAATAGTCATGttaaccttttttaaaaaatgaaaaaagttcaacaaaaataaagatgaagGATATGTCAAAGACACTGGTAACACCATTAGCATTGGGTTGTACTTTCAGGAATTTTAAATGCTGTTATTctcaaaaaagacaaatgttatcaataaaaacaacag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155257 True 1327 lncRNA 0.34 1 18051012 18052338

Neighbor

gene id symbol gene type direction distance location
AMCG00002535 LOC107751889,LOC107704104 coding upstream 96 17998046 ~ 18050916 (+)
AMCG00002527 ctnnb1,LOC107570993,LOC107701997,LOC107748497 coding upstream 239285 17806735 ~ 17811727 (+)
AMCG00002525 NA coding upstream 375902 17661879 ~ 17675110 (+)
AMCG00002526 dync1li1,LOC107654754,LOC107706262,LOC107591989,LOC107688360,LOC107710339 coding upstream 389839 17652475 ~ 17661173 (+)
AMCG00002529 NA coding upstream 579720 17445920 ~ 17471292 (+)
AMCG00002534 cnot10 coding downstream 92874 18145212 ~ 18161564 (+)
AMCG00002540 LOC106606077 coding downstream 285418 18337756 ~ 18346198 (+)
AMCG00002546 pomgnt2,LOC106605419,LOC106579937 coding downstream 404713 18457051 ~ 18458790 (+)
AMCG00002553 NA coding downstream 747522 18799860 ~ 18810379 (+)
AMCG00002565 nsun2,LOC107595606 coding downstream 1314978 19367316 ~ 19385301 (+)
G123808 NA non-coding upstream 110379 17926699 ~ 17940633 (+)
G123797 NA non-coding upstream 290817 17695860 ~ 17760195 (+)
G123653 NA non-coding upstream 902676 17091975 ~ 17148336 (+)
G123659 NA non-coding upstream 909577 17137413 ~ 17141435 (+)
G123568 NA non-coding upstream 1258213 16792100 ~ 16792799 (+)
G123916 NA non-coding downstream 452550 18504888 ~ 18509774 (+)
G123943 NA non-coding downstream 502147 18554485 ~ 18556562 (+)
G123950 NA non-coding downstream 531831 18584169 ~ 18586027 (+)
G123993 NA non-coding downstream 792030 18844368 ~ 18861644 (+)
G123997 NA non-coding downstream 810340 18862678 ~ 18863965 (+)
G123807 NA other upstream 66282 17915436 ~ 17984730 (+)
AMCG00002496 NA other upstream 1065106 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 1090930 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 3689476 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 4921315 13125378 ~ 13129697 (+)
G123989 NA other downstream 779676 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 1021355 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 1077729 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 2189510 20241848 ~ 20333030 (+)
AMCG00002622 NA other downstream 4935207 22987545 ~ 22990164 (+)

Expression


Co-expression Network