G123916


Basic Information

Item Value
gene id G123916
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18504888 ~ 18509774 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU155357
CAATTTTAACACTGCCTTTCTTTATTTGGTAGTTATGTAAAATGGCCTCAACAGAAATCCTCACCTGCTCTGCTGATGCAAACTGCAAAGGTTTCCGTTGACTTTCCATCTTGGAGCTGTGCTtcagcaaaatgcatttttgttctgCTCTAAGCCTTTCCACAAGGTTCTGGCAACCGTCCCTGCATTTACCAGGGCTGATAAGTTGACTATCCCTGTGGGAACAATTGATAAAGCTATCCCTTATAAAGACTCAAGCTTGGGGTCTTTCACAACttcagacaaatacaaaaaagggaAATCCACACCAAAACACAAGCCAACATACTTtagcattcaattattaaaaggattcttgttaaattaaatactcaATACAAGGTATTCATTAATGTACACAGTAGTCACATGTTTTTAGGCAGGCAACCTGACAATCACATGCACTCTTTTACTTAGCATAAAGGgaattgtaaaaagaaaaaccaaaccTGACCCTGGACAGTGAgagtaatgcatttcaaaatgcccagtagtttttttttagttcaccTGAATGTCGTAGtcattaataaacatgttcatcTAACTTTTGAGCACAAAACAAATTCCAATATGGCAAAACTTTTTGTTGGTTCCTGGGGTTCCCAATATACCAGCCTGCTAGAACATGTCCCTGTTTATTAACAATTGGTTTTAATCCTATGCAATTTCCAAAGTATTTATGCTTGACCTGCACCATTTATCATGTCATGTGTGGAGATGAAAGAATCCCCCATACCAGCCATCTCTACAAGCAACCAAACTCACTACCTTTAtaggggaaagaaaatacatatataaaacaatccCAATGTAAGGTGGAAATCTAGTGgcttaattaaaaggaaattaaaatgtagtttcaCAGTCTCCATAAAATCTCACTGCTGGAAAAGTGCCACTTGGGATCCCCTGCTCAGCTCGCCCCACGCcctaattaagtaattatccGCTCATTGCAACTGTAAATTGTACAAAGCCTAAAAGCAAGTCCCATGAGAAACAGCCGAGGAAATTCGTTAATTATACGTTGTCCATGGGGACCTCATACTTCAGACATTTCACAAGAAAACAAGTCACAGGCACATTACCCTTAATGATcatctacacacacacctaaCTCATGTCTGACTACCAAATTGTACACCAGCCTTTAAACTCTGAAACAAACCTTTTGACATCTCAGCTGTGATTAAAACAATGAAGCTGATTACACAGCCTGGATCTTTGGCCGAGAACCTCAAGATGATGAATGTTCGTAAATGTTCAAGTACATAGGATTTGAGAGAAATTGTGCCAATCGTGTCCTATTTTTGCATTCAGtgtcttgaaatgcattttaataccCAAACTTTAGGCACCACCAGGTGAGATGAACCTTAGTTTTACTCTTTAATACTGAAAGGAAACTACAGCTCTTCATTTGCAAGAAATCATAAGCTACAATATTTTAACTTTCTGCACATCTGACCTCCCGTTAACAGTGTGGGGTTGATGCACAAGACATGGCCATCAGTGCTCTTAAACCAAAGCAACACTTTcacatacatttactttttttttatgtaaagctATAATAAACATTAAGTCACTTGTCCTAGAACAGCAATGTACAAATGTCCCATTAAACAGCCTCATTTTCTATCCAATATACTGAACAGGAACTCAGCTCAGCAATTTTAGAATggtataaaaaaggaaaaactcacTTAAAAATACCACAAACTACAATTTATTAGCCATATTTTATTGTCAAATGAAGAGTTTATGCCTTTTTCTGGGCTTCTTTTTGGAGCTTCTTCACCTCATGCTTGATGATCTTGTTCCTCATCTTCTTGGCCTTCATCACCTTGAATCGGTCAAAGTCTGTCATTTTGGCCCTCTGTAAGAAAAGAGCAAATGTCAGTCAATGGCAAAGCCCCCGTCTTTTCCCCCCCCATTTAAGTCCAGAAAAGTTTTCAAATGCATCAGACACTGTTCAGCCATTTatcaaactttttttgtaaCAGCAGTATATCCATTGAGTTTACTCACTGGAAATAATCAATTATGAAAAGTAGTAAATATACAAACACCACCTGCCCTCTTAAAGAGCTTACAATTCATTACACTggcattcaataaaaacttcagctttactgtattttaactgGTTAAAGTGGAAAACTTTGTTAAGAATGATTGTAATATTTTGGTGGGCCACTAATGCATTTAGAAGAGAGGTTAGTTTAATGCAAGTTTGGTTGCTCTTGCAGCTAGTACATTAATGTGCCCATCATTATATACAGAGGTTTAAGTCTGGTATCTTTTACagaaaatctacattaaatgtcTATGACTATAAGACAGTATTTATAAATACTGGGAAATTGCTATTCCAACAAAGACAAGGAGTGCAACAGTCAGAGGTAATGGGACGATGCTGTTCTCTCTGCCTCCTGGAAACCCAGGTCTGCCACACACTACAAACAGACACCGTTCAAGGCAGtaattacacacaaataaatacctttTGTCTGGCTTCAATTTTCTTCGCCCAGCTGCTCTGAGCCCACTTCTCATTAACACCAGCCTTCTCCCAGGCCCGCCTCACAAACTTCTGACGAGCACTGGGGCACCTTGATGACAAAATCGGTGAGCTGCATGCACTTGAAAGGCATGGACTGCCTCTTCACACCAGTGCAAGGGCCATCTACCAGAGCCTGTTCTGGTCAATGACATCTACGATGGCCACCAATTTGCCCTCATGGGGGCCAAAGGAGATGTAGGCAACCCGGCCAATCTCGACGAAACGCTTGAACACCTTCATGCGCTCACCATGATGGCAGTCCACGAACAGAAAGGACTTGGCGGCTTCCGTTCCCCGATGATGCTGCTTCCGCTCCGAAGACAGCGGTATCTGCGCAAGCGCGGGATGACGTCAACAGCGGGACTTGCGGAAGGAT
>TU155358
TAATAATCAATGCTTGGGCAGAAGACATTTAAAAGCCACCCACTATATATTATAGTCTAAGGAGAATAGTGAGTGATAGTGGTTGAGCCACAGGGTCAGAGACACTACACTTGAAATCGGAGAGACTCCAAGGGATGTAAACTTACATCCAAAGAGGTTTCTATACATATAGTAAGAAAGGAAAAGCTTACCATCTTCTTGGCCTTCATCACCTTGAATCGGTCAAAGTCTGTCATTTTGGCCCTCTGTAAGAAAAGAGCAAATGTCAGTCAATGGCAAAGCCCCCGTCTTTTCCCCCCCCATTTAAGTCCAGAAAAGTTTTCAAATGCATCAGACACTGTTCAGCCATTTatcaaactttttttgtaaCAGCAGTATATCCATTGAGTTTACTCACTGGAAATAATCAATTATGAAAAGTAGTAAATATACAAACACCACCTGCCCTCTTAAAGAGCTTACAATTCATTACACTggcattcaataaaaacttcagctttactgtattttaactgGTTAAAGTGGAAAACTTTGTTAAGAATGATTGTAATATTTTGGTGGGCCACTAATGCATTTAGAAGAGAGGTTAGTTTAATGCAAGTTTGGTTGCTCTTGCAGCTAGTACATTAATGTGCCCATCATTATATACAGAGGTTTAAGTCTGGTATCTTTTACagaaaatctacattaaatgtcTATGACTATAAGACAGTATTTATAAATACTGGGAAATTGCTATTCCAACAAAGACAAGGAGTGCAACAGTCAGAGGTAATGGGACGATGCTGTTCTCTCTGCCTCCTGGAAACCCAGGTCTGCCACACACTACAAACAGACACCGTTCAAGGCAGtaattacacacaaataaatacctttTGTCTGGCTTCAATTTTCTTCGCCCAGCTGCTCTGAGCCCACTTCTCATTAACACCAGCCTTCTCCCAGGCCCGCCTCACAAACTTCTGACGAGCACTATGGGCACCTTGATGACAAAATCGGTGAGCTGCATGCACTTGAAAGGCATGGACTGCCTCTTCACACCAGTGCAAGGGCCATCTACCAGAGCCTGTTCTGGTCAATGACATCTACGATGGCCACCAATTTGCCCTCATGGGGGCCAAAGGAGATGTAGGCAACCCGGCCAATCTCGACGAAACGCTTGAACACCTTCATGCGCTCACCATGATGGCAGTCCACGAACAGAAAGGACTTGGCGGCTTCCGTTCCCCGATGATGCTGCTTCCGCTCCGAAGACAGCGGTATCTGCGCAAGCGCGGGATGACGTCAACAGCGGGACTTGCGGAAGGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155357 True 2984 lncRNA 0.40 5 18504888 18509774
TU155358 False 1309 lncRNA 0.43 4 18506904 18509774

Neighbor

gene id symbol gene type direction distance location
AMCG00002546 pomgnt2,LOC106605419,LOC106579937 coding upstream 46098 18457051 ~ 18458790 (+)
AMCG00002540 LOC106606077 coding upstream 158690 18337756 ~ 18346198 (+)
AMCG00002534 cnot10 coding upstream 343324 18145212 ~ 18161564 (+)
AMCG00002535 LOC107751889,LOC107704104 coding upstream 453972 17998046 ~ 18050916 (+)
AMCG00002527 ctnnb1,LOC107570993,LOC107701997,LOC107748497 coding upstream 693161 17806735 ~ 17811727 (+)
AMCG00002553 NA coding downstream 290086 18799860 ~ 18810379 (+)
AMCG00002565 nsun2,LOC107595606 coding downstream 857542 19367316 ~ 19385301 (+)
AMCG00002564 med10,LOC106588698,LOC107691542,LOC107595625,LOC107584362 coding downstream 897284 19407058 ~ 19410399 (+)
AMCG00002571 irx2,irx2a,LOC107558646,LOC107554509 coding downstream 1520384 20030158 ~ 20033860 (+)
AMCG00002572 LOC106593690 coding downstream 1719953 20229727 ~ 20238940 (+)
G123833 NA non-coding upstream 452550 18051012 ~ 18052338 (+)
G123808 NA non-coding upstream 564255 17926699 ~ 17940633 (+)
G123797 NA non-coding upstream 744693 17695860 ~ 17760195 (+)
G123653 NA non-coding upstream 1356552 17091975 ~ 17148336 (+)
G123659 NA non-coding upstream 1363453 17137413 ~ 17141435 (+)
G123943 NA non-coding downstream 44711 18554485 ~ 18556562 (+)
G123950 NA non-coding downstream 74395 18584169 ~ 18586027 (+)
G123993 NA non-coding downstream 334594 18844368 ~ 18861644 (+)
G123997 NA non-coding downstream 352904 18862678 ~ 18863965 (+)
G124067 NA non-coding downstream 774104 19283878 ~ 19284277 (+)
G123807 NA other upstream 520158 17915436 ~ 17984730 (+)
AMCG00002496 NA other upstream 1518982 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 1544806 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 4143352 14327632 ~ 14361536 (+)
AMCG00002393 NA other upstream 5375191 13125378 ~ 13129697 (+)
G123989 NA other downstream 322240 18832014 ~ 18838531 (+)
AMCG00002562 LOC106579813 other downstream 563919 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 620293 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 1732074 20241848 ~ 20333030 (+)
AMCG00002622 NA other downstream 4477771 22987545 ~ 22990164 (+)

Expression


Co-expression Network