G123993



Basic Information


Item Value
gene id G123993
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 18844368 ~ 18861644 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU155463
GTTTCTATGTGGATCCACTCGAATAAAGCTGATTGACTTAAAACTCCAGTCCCACAAACTCTTTCCAACAGCTGGCATTTGCTGTATGAGTGCACTGAGACGTTTGATGTCAGCTGGCAGTGAAGATGACGCTACTCGCAGGTGGTTTTCAAGACTCCTGATCGGGACTGTGCAACAATAACCTCCTGAAACCCTGAGTTCAAAAGGAAAACAGAAAACGGCACCATGGAAGTGAATACTGAATTTTATGGTTTCAATAATTCTCATAGTATGAACATGNNN

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU155463 True 282 lncRNA 0.42 4 18844368 18861644

Neighbor


gene id symbol gene type direction distance location
AMCG00002553 NA coding upstream 33989 18799860 ~ 18810379 (+)
AMCG00002546 pomgnt2,LOC106605419,LOC106579937 coding upstream 385578 18457051 ~ 18458790 (+)
AMCG00002540 LOC106606077 coding upstream 498170 18337756 ~ 18346198 (+)
AMCG00002534 cnot10 coding upstream 682804 18145212 ~ 18161564 (+)
AMCG00002535 LOC107751889,LOC107704104 coding upstream 793452 17998046 ~ 18050916 (+)
AMCG00002565 nsun2,LOC107595606 coding downstream 505672 19367316 ~ 19385301 (+)
AMCG00002564 med10,LOC106588698,LOC107691542,LOC107595625,LOC107584362 coding downstream 545414 19407058 ~ 19410399 (+)
AMCG00002571 irx2,irx2a,LOC107558646,LOC107554509 coding downstream 1168514 20030158 ~ 20033860 (+)
AMCG00002572 LOC106593690 coding downstream 1368083 20229727 ~ 20238940 (+)
AMCG00002574 NA coding downstream 1508899 20370543 ~ 20396006 (+)
G123950 NA non-coding upstream 258341 18584169 ~ 18586027 (+)
G123943 NA non-coding upstream 287806 18554485 ~ 18556562 (+)
G123916 NA non-coding upstream 334594 18504888 ~ 18509774 (+)
G123833 NA non-coding upstream 792030 18051012 ~ 18052338 (+)
G123808 NA non-coding upstream 903735 17926699 ~ 17940633 (+)
G123997 NA non-coding downstream 1034 18862678 ~ 18863965 (+)
G124067 NA non-coding downstream 422234 19283878 ~ 19284277 (+)
G124070 NA non-coding downstream 472155 19333799 ~ 19384234 (+)
G124094 NA non-coding downstream 529479 19391123 ~ 19394724 (+)
G124150 NA non-coding downstream 1299903 20161547 ~ 20161753 (+)
G123989 NA other upstream 5837 18832014 ~ 18838531 (+)
G123807 NA other upstream 859638 17915436 ~ 17984730 (+)
AMCG00002496 NA other upstream 1858462 16976288 ~ 16985906 (+)
AMCG00002500 snrpd1,LOC105910057,LOC107655105,LOC107559756 other upstream 1884286 16958161 ~ 16960082 (+)
AMCG00002437 pcbp3,LOC108266078,LOC107657516,LOC107728912 other upstream 4482832 14327632 ~ 14361536 (+)
AMCG00002562 LOC106579813 other downstream 212049 19073693 ~ 19127947 (+)
AMCG00002561 NA other downstream 268423 19130067 ~ 19133567 (+)
AMCG00002573 NA other downstream 1380204 20241848 ~ 20333030 (+)
AMCG00002622 NA other downstream 4125901 22987545 ~ 22990164 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other downstream 4206480 23068124 ~ 23180043 (+)

Expression



Co-expression Network