G124331


Basic Information

Item Value
gene id G124331
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 21125015 ~ 21170354 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU155851
CCGGGCCTAAAAATAGCACCGAGACAGACTGTGATGCACATGACAGCGACAggctcccacacacacacacacacacacgtcgcAAAACAAGACAGCGAGTCAAAATCTAGGGTTCAGTTCCagctgattttatttccttcttgaaaaagaaaaaaaaaaaaatatttacagaagtAGATCGACAATCTGACAGGCAGTGACTTGACACGATTAGCtggcatgattttttttttttgtcttgaaacTTTGTTATGGCATGATCATTAGACAAAACAATATTCTACACAGCATATTGCACagcatgaatgaaaataaagttaatatatttatatatatatacgtaaaaaaaaaaaatcatacgaACAACCACCTTAAACGTAAGTAAGGATGTAGAGATAGCTGTCCTAGTGCCTGTCATGTTATATCTCAACAACATACATCAACACACAATCTTCTTTTGCTTATAATACAGacttaaaatgtacaaagatgttttcacttttttcctttttttttttttccttttaaaacacaacagctATAAACCTGAATCGGAAATACAAATGCTATTCACCATGCCATAAGATactaaaacaattatatttagcCGACAAGTAGAAaagattaaatattcaaatacaataaatgagaaACGCAGTACATAGTCGCGAACTCAAATCGGCATTTTGAGTCTATATTTCCATCCAGTGGTTAAAACCGAACTTTTTGCTTATTATAAAAGCGCCAAGAAATGGTTAATTTAAAGCTACAGTATCTCTTTTCATAACGTCAGATactaaaaagcagaaatgtttaCAAGGATACTGAAAAGTGAGATACTGTGTCTTTAAGAAGCCTGCAGATTGAAACTGTAAACATGGGTAAGGGGGTCGATTTGGAGATAACCAACCCCCCAGTTCTTTAAAATTAGGAAATCCAAACAGCGATTTACACCGATTGACACCccctttatatattttgtacaaaaatacactgagaaaataatcaaacgttttcctctcttttttttgtgtttttttttttttttaaaaattttatatattttata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155851 True 1069 lncRNA 0.33 2 21125015 21170354

Neighbor

gene id symbol gene type direction distance location
AMCG00002582 NA coding upstream 54519 21054506 ~ 21070496 (+)
AMCG00002581 NA coding upstream 70859 21021936 ~ 21054156 (+)
AMCG00002577 NA coding upstream 256059 20687350 ~ 20868956 (+)
AMCG00002576 NA coding upstream 661686 20457743 ~ 20463329 (+)
AMCG00002575 slc6a3,LOC108272311,LOC107558633,LOC107564665 coding upstream 698217 20411836 ~ 20426798 (+)
AMCG00002587 NA coding downstream 504717 21675071 ~ 21693525 (+)
AMCG00002588 NA coding downstream 529332 21699686 ~ 21742911 (+)
AMCG00002590 ndufb9 coding downstream 642224 21812578 ~ 21815488 (+)
AMCG00002598 NA coding downstream 980442 22150796 ~ 22156021 (+)
AMCG00002599 NA coding downstream 1071923 22242277 ~ 22254740 (+)
G124232 NA non-coding upstream 562752 20561622 ~ 20562263 (+)
G124178 NA non-coding upstream 765320 20359323 ~ 20359695 (+)
G124165 NA non-coding upstream 884136 20240585 ~ 20240879 (+)
G124150 NA non-coding upstream 963262 20161547 ~ 20161753 (+)
G124094 NA non-coding upstream 1730291 19391123 ~ 19394724 (+)
G124364 NA non-coding downstream 483428 21653782 ~ 21654725 (+)
G124403 NA non-coding downstream 624640 21794994 ~ 21795202 (+)
G124405 NA non-coding downstream 624961 21795315 ~ 21795957 (+)
G124408 tatdn1 non-coding downstream 635266 21805620 ~ 21810821 (+)
G124494 NA non-coding downstream 1163595 22333949 ~ 22337958 (+)
AMCG00002573 NA other upstream 791985 20241848 ~ 20333030 (+)
AMCG00002561 NA other upstream 1991448 19130067 ~ 19133567 (+)
AMCG00002562 LOC106579813 other upstream 1997068 19073693 ~ 19127947 (+)
G123989 NA other upstream 2286484 18832014 ~ 18838531 (+)
G123807 NA other upstream 3140285 17915436 ~ 17984730 (+)
AMCG00002622 NA other downstream 1817191 22987545 ~ 22990164 (+)
AMCG00002623 sqle,LOC106579093,LOC106605546,LOC107686341 other downstream 1897770 23068124 ~ 23180043 (+)
G124689 NA other downstream 1982294 23152648 ~ 23290535 (+)
G124769 NA other downstream 2507581 23677935 ~ 23681385 (+)
G124863 NA other downstream 3251898 24422252 ~ 24422613 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G105871 NA non-coding NC_048566.1 CM023220.2 2446092 ~ 2446640 (+)
bowfin (Amia calva) G95850 lipe unknown CM030132.1 CM030132.1 3186169 ~ 3189093 (-)