G124669


Basic Information

Item Value
gene id G124669
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 22996819 ~ 22999108 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU156251
GACAACATTTATTACGAGCGAGAAATCGACACATTCAGTACTGAGTAAACCAGGATGGACGCTTCCTTTTTGTCTCTACGATTCTTTTCCCCTCGTCCACCTCGCTGGGCTTCTCGTTCTCGTACAGAACGACAGTCTCCACATGCGGGCTGTTAAAGGGCTTTTCTTCCATCGCCTGGATCTGTCCTCGAATCAAAGCCGTCTCCCTCCGTACTCTCTCATAGCAGAAACCGCACAACACGTGCTTCAGTTTTAGATGCCCGCATTCTGGGCATGGCACAATATTTCTTAATTGGGATGAGATTGGCAGGGTTTCGTCTGCGGCAGCGGTTTACTTCAATGGTGCGTCTCTTCTTGGGAGCAGCCATCCAGAAAATGTTATCCAGAAAACTGGGAACTTCATCCTGTTCAAGTGTGGACTTGGGCTGGGGGAGGAGACAGGGACCCTGTACAGCCAAAGCGGGGACTATAAACCAAACCAAATTCCTCTCAAACCCCACAGTCTGAAGAACTCGCTGTTCAAAGCTTATCAATGAACGTCTCAAAAAACAGATAAACCCCGCCACACTCATTTTCATCTCCCCTACCTACCCCCCGACTAAAGTTAAAGCATGTCAGGGTCACACATGCACTGCGACTGC

Function

GO:

id name namespace
GO:0044249 cellular biosynthetic process biological_process
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0019843 rRNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU156251 True 641 lncRNA 0.49 3 22996819 22999108

Neighbor

gene id symbol gene type direction distance location
AMCG00002628 si:rp71-45k5.4,psma2,LOC108440756,LOC108425697,LOC107686300,LOC106570382,LOC107724313,LOC103023870 coding downstream 299 22990253 ~ 22996520 (-)
AMCG00002617 NA coding downstream 10248 22971505 ~ 22986571 (-)
AMCG00002614 NA coding downstream 28126 22959715 ~ 22968693 (-)
AMCG00002615 NA coding downstream 37899 22955276 ~ 22958920 (-)
AMCG00002616 derl1,LOC107593655,LOC107736822,LOC107657695,LOC107699495 coding downstream 70006 22909190 ~ 22926813 (-)
AMCG00002627 NA coding upstream 1619 23000727 ~ 23012696 (-)
AMCG00002626 sdha,LOC107694085,LOC107729872,LOC105909048,LOC107751682 coding upstream 19838 23018946 ~ 23028347 (-)
AMCG00002625 NA coding upstream 34700 23033808 ~ 23036859 (-)
AMCG00002632 NA coding upstream 422690 23421798 ~ 23471546 (-)
AMCG00002633 zfpm2 coding upstream 678834 23677942 ~ 23682594 (-)
G124591 NA non-coding downstream 343100 22653482 ~ 22653719 (-)
G124582 NA non-coding downstream 398264 22597999 ~ 22598555 (-)
G124535 NA non-coding downstream 558090 22436886 ~ 22438729 (-)
G124434 NA non-coding downstream 1043148 21941177 ~ 21953671 (-)
G124431 NA non-coding downstream 1070963 21925607 ~ 21925856 (-)
G124765 NA non-coding upstream 656876 23655984 ~ 23663572 (-)
G124779 NA non-coding upstream 874570 23873678 ~ 23928150 (-)
G124873 NA non-coding upstream 1411921 24411029 ~ 24411336 (-)
G124907 NA non-coding upstream 1577057 24576165 ~ 24577131 (-)
G124975 NA non-coding upstream 1949042 24948150 ~ 24950358 (-)
AMCG00002596 NA other downstream 1094222 21901292 ~ 21902597 (-)
AMCG00002584 NA other downstream 1318274 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 4955246 17933464 ~ 18041573 (-)
G123829 NA other downstream 5007354 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 5290530 17690008 ~ 17706289 (-)
G124719 NA other upstream 86886 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 182813 23181921 ~ 23192656 (-)
G124829 NA other upstream 1262457 24261565 ~ 24261823 (-)
G124848 NA other upstream 1292679 24291787 ~ 24339566 (-)
AMCG00002682 NA other upstream 3267944 26267052 ~ 26279621 (-)

Expression


Co-expression Network