G125036


Basic Information

Item Value
gene id G125036
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 25374880 ~ 25433728 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU156719
CAAAGACAGCAAAGCAGGAGGAAAGCAGCCACTGCTGGTGTGGTGTAGTTTTCCAGatattaagcaaataaaaaaacaaccaaaactaaAGACTCCACTCCTCCAAAATTGTTttggtaattattttttattccacttACATGAAATTACATGTCTTCCCTCCAAATAACAGTTATGCTTGGGTGTTCTGTATGAAAATccagaaaacattaaacaaagctaGCCAGCCAGTCAGCAACAGCCTCCATTTACTTCCCCATTAAACTATTTCTTTAGCCACATGCATTTTAGGCGAGtatcaaaaggaaaacaaaggaaacaaaaacaaaaccctaataaaaaataaaaaaaagtaactaGATAAGCACATGGGAAATTCTTACTGCTCTGCTCGATATACAATAAAAGTTACAGTATCAAGCTTTTAATTGCTTGCTTTGTTCTTAGGTTTTCTATACCTCgtaatttttatttgttttacttttaaatttttacatagaaataaaaatgacttgCAAGTCacccaaaatgaaaatgaacttgAGCAGGTGACAGTGGAATGTTATCTTTTCTGCCCGTGCCAAAGGGAACGTGTTTGACAGCATCCTTTCGTGATGCCCTCCCAGCCAATTTCCTAGTTACAGACAGTCTTCATATGGACATGGGACACTATTTTGTGTTGGCTTTGTGGCACACCCCAGAATGTTTGAAAGAAATatggcaaacatttaaaaatgttacatacaTCTCAATCTGAAATCACACCCTTTGACTAAAGTCTTCAGTGTTCAGAACAATTGCCCCATTGCTCCTCACATGAAAACATGGCAAACAAACAAGTTCACCCTCACCctcccaaaaaagaaaagtgacagAAAGCTTGTGAAAGAACTAAAACAGAAACTAGTTGTATGGGACAGCTGGATGAGGTGGTCTCAGTGTTGATGAACTGGGATGATAGGCAGAGAGGAAAGGGGAGACTCAGTTATCTTTTCCATCCTCGTTGTCCTCTCCATCACCCTGGTTGTCTGAGGTCCACTGTCAAATTGTCTCTCAGTAGCTGCATGATTAATGTGCTGTCTTTGTATGAATCTTCATTCAGTGTATCAAGCTCTGCAATTGCATCATCAATACTGTTTTTGCCAGGTTGCAGGCTTTTTCAGGTGAGTTGAGGATCTCATAGTAAAAGACTGAGAAGTTGAGGGCCAGACCCAGGCGAATGGGATGTGTGGGCTGCATTTCTGTCCTGCTGTGGTCGAAAGCTTTCTGGTAGGCCTCCTGTGAGTTTTTAATGGTCGTCTTTGTCTGACCCAGCCACCTCAGCTAAGTAGCGATAGTAATCTCCTTTCATTTTCAAGTAGAAGACTTTGCTTTCTGCAGTAGAAGCTTTGGGAATCAAGTACTTGTCCAAAAGATTCAGAACATCCTGGCAGATTTCCTTGAGCTCTTTCTCGACCTTTTCCCTGTACTCTTTCGCCATCGCCTGCTTCTTGTCGCTGCCCTCAGTCTTCTGCTCAATGCTCGAGACCACCCTCCAGGAAGAGCGCCGGGCACCCACTACATTCTTGTAGGCCACGGAAAGCAGGTTACGCTCCTCACTGCTGAGCTCACCATCCTGCTCTGTCACCGCCTTCATGGAAGCGGCCATGTCATCGTACCGCTCAGCCTGCTCCGCTAGCTTGGCCTTCTGCACCAACTCGGCCTTCTGCGAGTCCTTTTCCTTGGGCACCGGCTGCTCAGACTTCTCCATGGCTGCTCAGTACTGTGGGGAGGGAGGAAGCAGA
>TU156720
CAAAGACAGCAAAGCAGGAGGAAAGCAGCCACTGCTGGTGTGGTGTAGTTTTCCAGatattaagcaaataaaaaaacaaccaaaactaaAGACTCCACTCCTCCAAAATTGTTttggtaattattttttattccacttACATGAAATTACATGTCTTCCCTCCAAATAACAGTTATGCTTGGGTGTTCTGTATGAAAATccagaaaacattaaacaaagctaGCCAGCCAGTCAGCAACAGCCTCCATTTACTTCCCCATTAAACTATTTCTTTAGCCACATGCATTTTAGGCGAGtatcaaaaggaaaacaaaggaaacaaaaacaaaaccctaataaaaaaaaaaaaaaaaaaaaaaaaaaagatatagcATTTGAATTTCCCCAATCCCTCCTCTGATCCCACCACACAGCAGTTCAGAGAGGAAACACAAGCGCTGATCTTTTAGAGTTTGGCTGTAGACAAGGAGAATGACAAGTTCAGTTCATGGGTAGAggcagaaataaattaatccacaCCATTACAAAACCCTAATACCACAAAATTCACACCACAAAGGACCACATTAgagaatggagagagaaaataacttttcactgaaatacaGTCACTCACGCAGCCTTAAATCAGAATACAAATTGGCTTATGTACTTCTCAGACCTCCATCCATGAAGCAGCAGTACAttgacacatttaaagagttaaCAGATAGTGGTTATAAATGCCTTAAAATGATTAGTCCCAAAGCCTTACAACTATTTATGCTTATTTTGTGAGGAAGttggcaaaaaagaaaatggactTCTATTAGgaatatatgtttaatacaagactaaattaatttgcatatcaTTATGTAAGGTACACTGTGGAAATAATACCAAGGCAACTTTAATTAATAACGGACTCAAGTTTATTCAGATTCTGGCACagacctttaaaataataattaaaaaagctaaatcacatcaattaaaatgacaatataaatGTGGAGCAATTCAAAAGTTAGCTGTGGTGTACATAGGCCTTTGCAAACAGAGTGgacatttagaaaaacaaatagtgcCCCTAGTGGTGGACCTTTAACTACCTTTCAGAACTTCAGTTTTGAAATTGATCAAAAAGGTATGATTACATGATAggatcaaaataaatgaattcacAGCAGTTACTCCAAGCTACAGTCCCAGAGCCACATTTATAACAACTGGCAGACCCCATTCCCACCAACCATGTGCCATAtgaacagacattttttttttaccacttcAGAACATGAGGTTTTCATCGTTTCAAAAAAAGTACAGAGGAAAGAATTTCATACTGTACATCTCTGCTTTATGGAGCTTTCTGCAGCAATTCAAGGTTGTCCTACAACATGGAAGTGgcaataaattaagaaaaaaaatatatatatattctataataaATCTGCAGTTTGTACagccactttaaaaaaaaataatgaacagtgACAGTTGGTCTGAAGggaatccagaaaaaaaaagttcctaTCATTTGCAGCACTCCCTTCATTCACATTAGCACAAAGAGGGATTATATTAAATGTGTCTTATGTCAGCTGCTCACTGCTCGACCTCGTTTAAGGTTAATTTTATTTGGCTTGTGCAGAGATGCTGTTGGCGCTGTATACAAGTTAACCTGTTTTAGTAAGTATCCTGATAGGGCAATCTTGAAGCTCACTGGGGCTCTCGCCAACTCTGGAGATGCGACAGGTGCTGGCTGAGATGCCCACAGACGCTGCTCATGCTTGCACGTCCTCTAGCTCTGGGGGCATGGGGGACTTCGGATGCTTGCTCTCGAAGTGCTGCTTGAACGTCTTGGGGTCGGGCATCTGTGTCTAGAATAGGAGAAACActgctttttaaagttttccTTTTGAGAAAATTTGTCAGTCTGAACCTCCAGGACCAGAATTGTGCTCGTTTGACATGCTAAATTTTTCTTTTACCGTCCCTGTGGAGGACTTTGGTTTCTTCACTGTCTGCTCTGCACAAAAAACATATGGACTACTGTTGCAGTTCAGACTTGCCCATTTTAATTGATCACTTACAAGCTTCTGTTATGCTTTATGTAAATGctaaatgacaatttatttttgtagactCTTATCCTAGGCTTGAGAAGTCTCAGGTCCCTTACCCTACAGATGGAGCAGGTGTACACTAAAGCAGCCTTGGCTGCAGTCTTTTGGTCGTGTCCATGCTTCTTCTTCTGTTCTGCCTGTTTCTTGGCATTCTTCTGCTGGGACTGAATCTTCTGGTGCCCACGAGCCATTACTGCCAGATAaaCTGACGCTTTAGTGTTTGGTGAACTTTGCGGATGTGAGAGTCCTGTTTCTGGCCCCTTTTCTTGAAGCAGCTGCACAATCGCAACCCCTTCCCACTCCCACGCCGATCCTGCTCTCACGGCTGCCAGCGTCTGCTCGCTATTGCGCACGACGCGTCACGACGGCTGGCCGAGCAAATGGGACTCCTCGCCAGCGCAGACGCAGACAGCGCCTCTCCC
>TU156721
CAAAGACAGCAAAGCAGGAGGAAAGCAGCCACTGCTGGTGTGGTGTAGTTTTCCAGatattaagcaaataaaaaaacaaccaaaactaaAGACTCCACTCCTCCAAAATTGTTttggtaattattttttattccacttACATGAAATTACATGTCTTCCCTCCAAATAACAGTTATGCTTGGGTGTTCTGTATGAAAATccagaaaacattaaacaaagctaGCCAGCCAGTCAGCAACAGCCTCCATTTACTTCCCCATTAAACTATTTCTTTAGCCACATGCATTTTAGGCGAGtatcaaaaggaaaacaaaggaaacaaaaacaaaaccctaataaaaaataaaaaaaagtaactaGATAAGCACATGGGAAATTCTTACTGCTCTGCTCGATATACAATAAAAGTTACAGTATCAAGCTTTTAATTGCTTGCTTTGTTCTTAGGTTTTCTATACCTCgtaatttttatttgttttacttttaaatttttacatagaaataaaaatgacttgCAAGTCacccaaaatgaaaatgaacttgAGCAGGTGACAGTGGAATGTTATCTTTTCTGCCCGTGCCAAAGGGAACGTGTTTGACAGCATCCTTTCGTGATGCCCTCCCAGCCAATTTCCTAGTTACAGACAGTCTTCATATGGACATGGGACACTATTTTGTGTTGGCTTTGTGGCACACCCCAGAATGTTTGAAAGAAATatggcaaacatttaaaaatgttacatacaTCTCAATCTGAAATCACACCCTTTGACTAAAGTCTTCAGTGTTCAGAACAATTGCCCCATTGCTCCTCACATGAAAACATGGCAAACAAACAAGTTCACCCTCACCctcccaaaaaagaaaagtgacagAAAGCTTGTGAAAGAACTAAAACAGAAACTAGTTGTATGGGACAGCTGGATGAGGTGGTCTCAGTGTTGATGAACTGGGATGATAGGCAGAGAGGAAAGGGGAGACTCAGTTATCTTTTCCATCCTCGTTGTCCTCTCCATCACCCTGGTTGTCTGAGGTCCACTGTCAAATTGTCTCTCAGTAGCTGCATGATTAATGTGCTGTCTTTGTATGAATCTTCATTCAGTGTATCAAGCTCTGCAATTGCATCATCAATACTGTTTTTGCCAGGTTGCAGGCTTTTTCAGGTGAGTTGAGGATCTCATAGTAAAAGACTGAGAAGTTGAGGGCCAGACCCAGGCGAATGGGATGTGTGGGCTGCATTTCTGTCCTGCTGTGGTCGAAAGCTTTCTGGTAGGCCTCCTGTGAGTTTTTAATGGTGTCtg

Function

NR:

description
60S ribosomal protein L28

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU156719 False 1784 lncRNA 0.43 6 25417951 25433728
TU156720 True 2533 lncRNA 0.40 5 25374880 25433728
TU156721 False 1301 lncRNA 0.39 4 25431641 25433728

Neighbor

gene id symbol gene type direction distance location
AMCG00002660 NA coding downstream 40218 25299701 ~ 25334662 (-)
AMCG00002653 NA coding downstream 408471 24963795 ~ 24966409 (-)
AMCG00002655 seh1l coding downstream 441129 24921106 ~ 24933751 (-)
AMCG00002654 NA coding downstream 458297 24884986 ~ 24916583 (-)
AMCG00002652 NA coding downstream 540682 24811356 ~ 24834198 (-)
AMCG00002665 NA coding upstream 140105 25573833 ~ 25603050 (-)
AMCG00002666 NA coding upstream 170439 25604167 ~ 25611494 (-)
AMCG00002671 vps13b,LOC104942627 coding upstream 214085 25647813 ~ 25676650 (-)
AMCG00002670 NA coding upstream 312355 25746083 ~ 25752614 (-)
AMCG00002674 LOC106594737,LOC104943785 coding upstream 354655 25788383 ~ 25822702 (-)
G124975 NA non-coding downstream 424522 24948150 ~ 24950358 (-)
G124907 NA non-coding downstream 797749 24576165 ~ 24577131 (-)
G124873 NA non-coding downstream 963544 24411029 ~ 24411336 (-)
G124779 NA non-coding downstream 1446730 23873678 ~ 23928150 (-)
G124765 NA non-coding downstream 1711308 23655984 ~ 23663572 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding upstream 17487 25451215 ~ 25453998 (-)
G125075 NA non-coding upstream 176389 25610117 ~ 25612297 (-)
G125160 NA non-coding upstream 692826 26126554 ~ 26130462 (-)
G125178 NA non-coding upstream 771164 26204892 ~ 26205871 (-)
G125200 NA non-coding upstream 808526 26242254 ~ 26242531 (-)
G124848 NA other downstream 1035314 24291787 ~ 24339566 (-)
G124829 NA other downstream 1113057 24261565 ~ 24261823 (-)
G124719 NA other downstream 2078765 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 2182224 23181921 ~ 23192656 (-)
AMCG00002596 NA other downstream 3472283 21901292 ~ 21902597 (-)
AMCG00002682 NA other upstream 833324 26267052 ~ 26279621 (-)
AMCG00002688 NA other upstream 849612 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 1179748 26613476 ~ 26664767 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 1421165 26854893 ~ 26875246 (-)

Expression


Co-expression Network