AMCG00002727


Basic Information

Item Value
gene id AMCG00002727
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 254949 ~ 261173 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002727
CGGCTCTCTACGAGCGAGTCCATCCCGCAGCTCCCCTCTCCGGCCGCCACGCCGCAGCGGAGCCGCAGCGCCCCCTGCAGAGCTCCTCATCGGGAGGCTCGGGAGGGACAGACACCCTGGCGGTGGAATTGGACGGAACATGAAccgatataataataataataacatccgATGCAATAACCGTATTTTAATATCAGTGTCAGAGAAGCTACGCAATGCAGTCCATGTTGTTTTatgtgtaattgtgtatttgACTAATCACACAGAAAGCAGTTGTACAGCGTTGTATGAAAACGTGTATTTACTTATAATAAGGACGTGCGGTTATTCCCTTCCGGTGCAGCAGGTCAAGCAGCGCAGTACTTCCGGGTCAGGGGTGACCTGCGGTCTTGAATGTATTGGTGCCGGGGAACgaaagtaaaaacagaaatcCGTTGAAAAAGTTGAGGAAGTGAAATTAGTGGCACCAGCGCATGTGCCAGGTCCCCGCCCGGCTGTGTCGTGCTGGCGGTGAGAGTCGTGGAGCGGCCGGGGTGTCAGGCCTGACATCTGCAGTTGTGTGaccaagaaaacacacaacctgCACGATTTTAACACACTGTGCACAGCAGCACCGCGGTTTTAAAAGCACGAAGTTTGATCCAGTGGACGGTTCGTTTGCGGAGTCTGtttaaacaacaacattcaaAGGGTTGTTATTCCCCGTGAGGCAGACGAGGCTGTGGGGCGGCCGGACGGGAGCGGAGGCACATGGCCGAGGCACGGAGGGGCAGTCGGCCACAGGAGGGCAGGATGCCGCAGCAGAATGGGGTCCGGGGGCGTCCGAGGGCGGAGCAGGGCGACGTGGCTGAGGACGAAGGATCGCAGCCGGGGGGGTCCGGCGTCCAGCAGGAGGATGATGACCCCGCCGCTCGCCGGCACATCCGGCACCAGTACAGGGAGCTCATCAACAACGTGCAGCAGAACCGGGAGGACATGCTGagccccaacaacaacaaactgacCGAGGCTCTAGAGGAGGCCAACAAGCTGTTTGTGAATGtgcgTCAGGCCCGTGAAGCCGCACTGGATGCACAGTTCCTGGTTCTGGCCACAGACCTGGGCAAGGAGAAGGCCAGCCAGCTGCACGCCGAGGGCACTGTGTTCGACCCTGTGGCCTTTGCTGAGCACCTGCTGTCCTTCATGGGCCTGAACCggctggaggagggggaggagagtgACGAGGAGGGGTCTGGGGGGGGCTACCTGCCCCGGGACGCCTGGCACCGGCTGGGCAGGGAGGCAGAGAAGTGCTTCAAAACCTCTCCATCCTTCCATTACATGTTGGGCTCCTTCCTCCCAGACCCCCCGGCCCCCCGGCAGCGCGTGGAGAGGCAGCGCAGGGCCCCCAGCAAGGAGGAGCGCCGCATCATGCCCACACAGcTGAAGAAAATGGAAGAATCGTACCAGGAAGCAACAGAAAAGGAAGTGGAGAGGATTCTGGCGATTCTGCAGAGTTACTACGATGAGGACCCATCTAGTCCTATATCCTACTTCGAGTTTGTGATCGATCCCAAATCCTTTTCCCGCACGGTGGAAAACATCTTCCACGTGTCCTTCCTGGTCAGGGACGGCCTGGCCAAGATCGAGCTGGACAATTACAAGTTGCCCGTGATCGCACCAGTGCTTGGGGAGCAGGAGGCGGGGGGCAGCGGCTCCGGCAGGAAGCAGTGCATCGTCGCCATCAGCCCCCAGACCTGGAAGGAGATCATCGAAGTCTTCCAGATCCAGGAGCCACTGATCCCTGCCCCGCCAATGGTGAAGGAGTGAGGGGCGGAGACGGGCAGCCCCCGGACACGGCCCGCTCCGGTTGTGTGAGTTTAAAGGGGCTGAGCCGAGACCCAGAGAAGACGCCCCCATTCTGCTCTGAGAACTCCAGCCCACCGGGGGCTGCTTCGGAGCATCTCCTGAGGGGAAGCGTGTTGGTGTGTCTGAATTACCCAGCGGGAGAAGGGGGGGTGTGACGGTGAGGGGCGTGAGGGCAGCAGACACTTCTGCAGGCCAGTGATTAGTCCCCCCCAGCTGGCTGGCGTCTGTGTGTGAAGAGTTTATCGCTCTTGTGCTTGTGTtgtgaatgagagagaaaaggtTTATGCCTGTGTAGCACAGACTTTACGtgagaaataaaagaaaagctaACCCCCTCCTCATGAGGGTCccaatacaacaaataaaacccAATCCCAACGCAGGCAAGATGGCGCCGGCCGCAGGGGAGACGACGCCGGCCGCAGGGGTCCGGGGGGACACTGGGGGCTCTGGAGAAACTGTGTGGACTCGGCCTTCATTGTTTTCAGGATTAAAGTGCCTTCAAGCGGCTTCTCAGCTcaatatttttatactttttagttttagtttttttatcagaatgttgtatataaatgtactgCTTTGGGTACATTGTGATTAAAAATACTATAGAATTCACCGTCGTTGTGTTCGTT

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG:

id description
K22825 NSMCE4, NSE4; non-structural maintenance of chromosomes element 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002727 True 2483 mRNA 0.57 11 254949 261173

Neighbor

gene id symbol gene type direction distance location
AMCG00002728 NA coding downstream 26780 190340 ~ 228169 (-)
AMCG00002724 NA coding downstream 72426 172793 ~ 182523 (-)
AMCG00002731 NA coding upstream 19641 280814 ~ 292475 (-)
AMCG00002734 NA coding upstream 222729 483902 ~ 484300 (-)
AMCG00002732 wdr11,LOC107664693,LOC107741118,LOC107750394 coding upstream 224663 485836 ~ 513387 (-)
AMCG00002733 NA coding upstream 303487 564660 ~ 579964 (-)
AMCG00002737 NA coding upstream 489462 750635 ~ 751030 (-)
G138282 NA non-coding downstream 24169 227020 ~ 230780 (-)
G138303 NA non-coding upstream 40909 302082 ~ 387075 (-)
G138304 NA non-coding upstream 74564 335737 ~ 342518 (-)
G138310 LOC106579428 non-coding upstream 105034 366207 ~ 371624 (-)
G138324 NA non-coding upstream 222051 483224 ~ 483603 (-)
G138352 NA non-coding upstream 486321 747494 ~ 748469 (-)
AMCG00002725 NA other downstream 65612 184121 ~ 189337 (-)
G138245 NA other downstream 108109 144926 ~ 146840 (-)
AMCG00002743 psap other upstream 544587 805760 ~ 821591 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other upstream 659615 920788 ~ 925398 (-)
G138741 NA other upstream 2457035 2718208 ~ 2719419 (-)
AMCG00002828 NA other upstream 3667588 3928761 ~ 3953324 (-)
G138932 NA other upstream 3740477 4001650 ~ 4002804 (-)

Expression


Co-expression Network