AMCG00002728


Basic Information

Item Value
gene id AMCG00002728
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 190340 ~ 228169 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002728
ATGCAGGAGCACACCGGTCTAGACCCATTACCCCTGTGCTTCCTGGTGTTGGAGCTGGGCTGCACTTGTTTTACTGTCCATTCAAGCCCTTCACTGCTGTATGAATCGCCCAGGGACTGTAGAAAGAGCCACAGCGTACAGGAACAGCCCCCCAGCCCACAACTGCCCCACCTCACTGCCCCTGAACGAGCCCCCCGTCTCCCTGTCCTGAACACAGACTTCtgcccctctctgtgtgtgttgcctcGGGACCCCAGTGCGGAGGAGCTGCCTCGAGATCTGTTGAGAGAGAACACAGAGCCCGTCAAGGAACCCATCCCAGCACCCCCCACTGGATCTGCAGAGCaccctgcctgtctgtctgtactgaCCCTAGAACCCATTCTAGAACCACTCCCCTGTAGGTCTGTTCTGACCCAAGAACCCACTCCAGAACCACTCCCCTCTCTGTTTATACAGACTCCAGAGCCCACCACTCCAGAACCACTACTGACCCCAGAACCCACTCTAGAACCACTCCCCTGTCTGTCTCTACTTAACCCAGAACCCACTCTAGAACCACCCCCCTGTCAGTCTGTACCAACTCCAGAGCCCACCACTCCAGAACCActcccctgtctgtctgttctgaCGCCAGAATCCACTCCAGAACCACCCACGTGTCTGTCTGTACTTAACCCAGAACCAACCACTCCAGAACCActcccctgtctgtctgtactgaCCCAAGAGTCAAGCTCCAAGCCACGCCCTGTATCTCCTCCTGCCCCACAACACCCTGCAGAACATTCCTCGTtactctcctgtgtgtctggaCCGCCCCCGGAGCCCAACCCTGGACTGACCTCCTGGCCCCCCGAGAGCTGTGCGGACCCCCCTTCAGCCTTCATAAGGAGCTCGGACTCTGAAGGAGCCTTTGAGACCCCTGAATCCACCACCCCAGTGAAGGCCGCCCCCCCGCCACTCGTCCCCGAGCCGGAGCCTCAGCCATCCCTCCCCTCCGAGGACACAGGCTTCTGCTCCGATTCTGCCTCGGCCCCTGATGTGTCTCTCAGCGAGCCGCTATCTGAGCCCCCACTCCGCCCCGTCTGCCGCTCCTTGTCCACCGTCTTTGACGAGGACAAGCCCATAGCCAGCAGCGGCGCCTACAACTTGGAGCTTCTCGAAGCCGTCGACTCGTTCCACGCCTCTGCTGACCACGGCACCCCGGAGCAGCCCGGGTCCGAGCGCCCCGCCCCCAGCCGCCGCCGCTCCACAGACTCAGTGCCCGCTGCCCGCTGCCCACTGACGCGCTCCCTCAGCCTGCAGGCCGGTGAGCTTGAAGGCTCGGGGAAGGAGGACGGTGCCGCGGCCTCAGAGAAGCAGCAGCTTCGCGCAGAGGCCTTCAGCATCGGCACCGAGAGCGCCCCCGGCACGCTGCGAAAGGCCAAGAAGGCCCGGCCCGCCTCCCTGAAGAAGAAGCTCTCCCTCAAGCAGAAGCCTGACAGCCCCCGTCCGGAGAGCCCCCCGCAGGACAGCGCCTCCCCAGACCCAGACTCTGAGGGCTCCGGCACCAAGAGGACCGCAGCCCAGCCCGAGAGCCCCGCCCAGAGCCAAGAGGAGGAGGCCACACTCCCCGCCAGCGCCAGCCCAGAGCCGGCGGTGAGGAGGAAGACCGGAGTGAAGAAGCCCAAGCCCCCCGCGTGCTTGGAGCCTGAGGCGCCCACCTCCAAGGCAGCGGATAGGGGCGCCGCGGAGGAGACAGGTCCACCGGAGGAAGCCCCCCTGCCTGCCAGCCCCCCGCATGCAGACGAGGACTCGCCTATCCCCCCCAAGGCCTCCTACAACTGGGACCCTGACAACTTCGAGAGCATCAACCCATTCTGCACAGGCGGCAGCAAGGTGCCCAATTCGCCTGTCTGCAGCAGGAAGTCCGTGGCCTTCACCGCGGCCCCCGAGCCCCTAGAGCTGCCCTCGGAGCCTGCGCCCCCCCCCGACAGCACCCCCGCCGAGGAGCAGCCCCTGAACAAGCGCCAGTCCGTCAGGCTGGAGTTCGACTACTCAGAGGAGCGCGAGAGCGGAGAGCCCCCGCGGGAGGTCACGCCCCCGCCCAAGAAACTGGGCAAGAAGCCAGGTGCCAAGATGCCACTCAGGAAGCCAAAAATTGGGGTCCGAAAGCCCCCCCCAGCCGAGCAGCTGGACAACACCCCCTCCGCGCCGCCGCCGCCAGTGGACTGTGACGAGATCCCCATCCCCAAAGCCTCCTACAACTTCGACCCCAGCCAGTGGGACGACCCCAACTTCAACCCCTTCTCCTCCAGCAGCGCCATCCCCAACTCCCCCCGGCTGCCGCAGGTCAGCTACAGCTTCGACCCGGATGCCTTCGACGACTCCGTGGACCCCTTCAAGCCCTCCAACAAGATGGGCAACTCGCCGCCCAAGAACTCGGCCTCCTTTGAAGACGCCACGCCCCTGGCCACGCCCGAAGCCCCGCCGGTCATCCCCTCGGAGGACCACGCCACAGACGAGGAGAAACTCGCCTCCTCCTCCAATCAGAAGTGGACGTTCCAGGGCAGGCACCTGGCACCTGAGTGCCAGGACTACCCCCAGCCCTCCGACCTGTCGGCCTTCGTCAATGAGACCAGCTTCCCCTCGCCCAGCGACGTCACAGAGTATGAAATCGAGTACATGGAGAAGATTGGCTCTTCCTCCCCACCCCTCTCTTCAGGAAAGAAGCCCTCTCTGTACCTGAAGCTGGACTCGGTGCAGGAAAGTCCCTCCAAGAGTCTGTGTGTTCGGGGGTCTGAGCCATCCACCCCCTGCTCCGGgcTGAGCTTTGAGGAGGTGGAGGCCCAGCTCTCCAGTGGGATGAAGTCTCCTCTGTCCTCCTCGCGAGTCCTGGAGCCCCCAGCCGCCGAGTGCAGCAGGAAGATAGAGAGCGAAGCGCCGAGCCCAGGAATGGCCAGCGACCGAGAGGACGGGTCCCTGTCCCAGGAGCAGACAGACCTCGAAACCCCGCTGCTGGAGAGGCTGTCCCTGCACTCGGAGCCCAGCATGCCGCTGCACTACCTGGAGCCCGACCTGGCCGAGACCAACCCCGCCATCTTTGCCCAGAaactgcagGAGGAGCTCGTTCTGGCCGCTATGAGGATGGAGGCTCTGAAGGTAGCCAGTCAGATCTCCCAGTCCTCCTCGCTCTCCTCTGTGGACTGCGAGcCGAGGGAGATCTTGTCCCCAGCAGACAGTGTCGTGTCCAAAAGCTCCCTGTACTCCAGGACGGGCTACAGCGAGGGTGAGGGCAGCCCTTTCAATGTCCGGGACCTGGACCACTCTCTGGGCATTGCGCGGGAGGAGATCGTCGCCAAGGAGAAGGAAGTGGCCGAGTGGCAGAGGAAGTACGAAGAAAGCAGACAGGAAGTCGTGGAAATGAGGAGGATAGTGGCAGAGTACGAGAAGACCATTGCCCAGATGATtgagGACGAGCAGAGGGAGAAGTCTCTGTCCCACCACACCATCCAGCAGCTGATCGTGGAGAAGGAGCAGGCACTGGCCGACCTCAACTCGGTGGAGAAGTCCCTGGCCGACCTGTTCCGCCGCTATGAGAAGATGAAGGACGTGCTGGATGGCTTCCGCAAGAACGAGGAGGTGCTGAAGAAGTGCGCCCAGGAGTACCTGACCCGAGTGCGTAAGGAGGAGCAGCGCTACCAGGCCCTGAAGATCCACGCCGAGGAGAAGCTGGACAAGGCCAACTCGGACATCGCCCAGGTGCGGGCCAAGGCCAAGCAGGAGCAGGCGGCTTACCAGGCCAGCCTGCGCAAGGAGCAGATGCGGGTGGAGTCTCTGGAGAGGACCCTGGAGCAGAAGAACAAAGAGATCGAGGAGCTGACGAAGATCTGTGACGAGCTCATCTCCAAGATGGGCAGGAGCTAGCCGGGCCTGCGCTGCCTCCGCGCCGGGGGAGAGGGGACGGCAGCTCTACTGTCCCTCCgcggatgtgtgtgtgtctccactGGACAGAAGTTTCCCTGTAGCCTCTGCACTGCTGTACTTCGTAGATGAGACTGTGTCGTGTGTAGCACCCAGAGGAGAGGACTCCCGAACGCTCGCTTCGTTTCCCTTCCTTTCTGTAGCAAGTTTCCTGTATCAGGGGTCTTGTGAGGTCCTGGGATAACCACTTTGCTGCTGCACCGGCCCCTGGGGGCCCCTGGGGACCCCTGGCGTCCCCCGGGACCTGGACTCTCAGCCGGGACCGGACGGGGCTCAGCGCAGCCTGAGTGACTCCCTGCAGCGATCTGCTTTACAAAAGAACTCggtttggggtggggggacacAGATCAtcacacaattaaattaatcaatcaatcaatcagtgaatCATACATGCATGTCCTTAGATAACGAGTGTCTTCATACTGTAAATAACAATGTGGCTGACGAAGGGAACAAATTGCAATTTTGATACGGTCTCCTGTCAGTTCAGCGGCTCACGTACTTTGTAGATAAATGGTGTTtgcttcctttttaaaatcgggggattttatttttatgttttaattgttgatatttttgaggggtgggggggttgagtGTCGATTGTCTCAGTCCTGCTATTGTTGATGTAACGACTCGGGAGGGGATCCACCGTGGCTTCCAGCTGGGTTTGAGCACCTGCTTTCAGTGCAATAAATATGGCAATAAAGATGTTCAGTCCTGGAGTTCTTGGAGGCGTTGCTGTTGGACTGGTCAGAGACGGGAGCTATTGGGGGGCTGGGACAGGGGACTGTCAG

Function

GO: NA

KEGG:

id description
K14282 TACC2; transforming acidic coiled-coil-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002728 True 4766 mRNA 0.61 17 190340 228169

Neighbor

gene id symbol gene type direction distance location
AMCG00002724 NA coding downstream 7817 172793 ~ 182523 (-)
AMCG00002727 NA coding upstream 26780 254949 ~ 261173 (-)
AMCG00002731 NA coding upstream 52645 280814 ~ 292475 (-)
AMCG00002734 NA coding upstream 255733 483902 ~ 484300 (-)
AMCG00002732 wdr11,LOC107664693,LOC107741118,LOC107750394 coding upstream 257667 485836 ~ 513387 (-)
AMCG00002733 NA coding upstream 336491 564660 ~ 579964 (-)
G138303 NA non-coding upstream 73913 302082 ~ 387075 (-)
G138304 NA non-coding upstream 107568 335737 ~ 342518 (-)
G138310 LOC106579428 non-coding upstream 138038 366207 ~ 371624 (-)
G138324 NA non-coding upstream 255055 483224 ~ 483603 (-)
G138352 NA non-coding upstream 519325 747494 ~ 748469 (-)
AMCG00002725 NA other downstream 1003 184121 ~ 189337 (-)
G138245 NA other downstream 43500 144926 ~ 146840 (-)
AMCG00002743 psap other upstream 577591 805760 ~ 821591 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other upstream 692619 920788 ~ 925398 (-)
G138741 NA other upstream 2490039 2718208 ~ 2719419 (-)
AMCG00002828 NA other upstream 3700592 3928761 ~ 3953324 (-)
G138932 NA other upstream 3773481 4001650 ~ 4002804 (-)

Expression


Co-expression Network