AMCG00002731


Basic Information

Item Value
gene id AMCG00002731
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 280814 ~ 292475 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002731
ATGCAGCCCTCAGATGCAAATGCTACCGGCGCAGTCACTGGGCTAGAGCGGAGAGACGCACGCAAGAGCAACAGCAAGAGCAGCCCTGTGCGTGACACGGCACCCGAGCGCTGGGTTCGGAGGCGCACGGGCTACACACGATCAAGCCAGCAGCAGTGGCCTGCGAGAGGAGAGGAGCAGCAGCTCAGGGCAGCACCTGCTCTCAGTCCGGATCAGAAACAGGTCTCCTTCCCTCAGACCCGATCAGCATGTTTAGAGAGGGCGGCGTCAGTGAAGGCCCCGATTGACGTGCGGAGCTGTGGAAACCCCCGGGCCCCGCGTGCTGCTCGAGGGCCCGTCCAGTCGGCCCCACGGTGTCATCGGGAGGCGAGAGGTGTCGGGAACGACTCCCTGGAAGGCCGCCCGGCCCCGCGCCGCACTCCTCCGAcccgtcccccccccccccccccccccgagacCCTCTGGAGCgagggagGACTGCAGTCGGCAGATGGCAGGGCAAACCACTGCGCTCCGGTGCTTGCCAATCCTGCCCGTCCCCGTGATGCCACACCGGACGGAGTTGCCACTCCTGGCGCGCTACGGGAGGCCCCGGGCAGGATGGGCATCTCCGTCCGGCCATCGCTGAGGGGAGAACTGCGGAATCAGCCTCTGgcTGAGAGCACCCCCGACATGCCCGACTGTGGCTACGGCTCTTTCCACCAGCAGTACTGGCTGGATGGCCGCATCATCGCCGTGGGCGTCATCGACATCCTGCCCACCTGCGTATCCTCGGTGTACCTGTACTACGACCCCAGCTTCTCCAGCCTGTCCCTTGGCTCCTACTCCGCCCTCAGTGTTCAGTCCGTTGAGGGGCCAGTCATCTCGGAGAGAGAGACCACCTGCTGTAATCAAGGGGAGCACTGGGGCCCCCGCAGCGGCTCAGTCATCACCAGCCTTTCATTTCCCGTTGTTAACGatgtgtctctctcctcctctctccctggtGCGGCGCTTCCCCCCCGGCAGTTCAGAAGATTCCTCTGCGACTCTCCTCTGGAGGAGACCCCCAGAGCCCGAGCCCTCAGGTCAGAGCAGAGCCGAGCTACTGTGGAGACACTCCCTCGTCTGAGAGGGGCCCCCAGCCCCAGTACAGAGCTGTCCGCCCCTCGCGCTGCAgtgaacagaaatataatatacacGTCTTTCACAGATCGCCAGGAGGCGCTAAGTCGCTGTGCAGTGACTGCTCTGAGCTCCGGTAACGACAGAAGGGGAACTCACCCAAATGAGCTCTCGATCCGAGTTGGACAGACGGACGAACTGACGGCCTGCCGGTTCATTGACACTTCGCCCTGGAGACTGACTCCAAACAGCAGCCATCAGACTGAAGCCGAGGGCCACCGAGGGCCCTGCCGAGGAGGCTGTGCTCATGCAAGACAGGGACTTGAGCCCAGCCTCTCCAGGATATGGGTGTCCAAACAGATACAGATTAAGACACCGTCTGTGGCCAAAGCCAAACCGCAGGAGCTTAGCGCTCCAAATGTGGAGTCTTTACTGGCACGGAGCACCACAGAGAAGTGA

Function

GO: NA

KEGG:

id description
K00685 ATE1; arginyl-tRNA---protein transferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002731 True 1563 mRNA 0.63 8 280814 292475

Neighbor

gene id symbol gene type direction distance location
AMCG00002727 NA coding downstream 19641 254949 ~ 261173 (-)
AMCG00002728 NA coding downstream 52645 190340 ~ 228169 (-)
AMCG00002724 NA coding downstream 98291 172793 ~ 182523 (-)
AMCG00002734 NA coding upstream 191427 483902 ~ 484300 (-)
AMCG00002732 wdr11,LOC107664693,LOC107741118,LOC107750394 coding upstream 193361 485836 ~ 513387 (-)
AMCG00002733 NA coding upstream 272185 564660 ~ 579964 (-)
AMCG00002737 NA coding upstream 458160 750635 ~ 751030 (-)
AMCG00002738 csgr03h10orf54 coding upstream 470654 763129 ~ 768823 (-)
G138282 NA non-coding downstream 50034 227020 ~ 230780 (-)
G138303 NA non-coding upstream 9607 302082 ~ 387075 (-)
G138304 NA non-coding upstream 43262 335737 ~ 342518 (-)
G138310 LOC106579428 non-coding upstream 73732 366207 ~ 371624 (-)
G138324 NA non-coding upstream 190749 483224 ~ 483603 (-)
G138352 NA non-coding upstream 455019 747494 ~ 748469 (-)
AMCG00002725 NA other downstream 91477 184121 ~ 189337 (-)
G138245 NA other downstream 133974 144926 ~ 146840 (-)
AMCG00002743 psap other upstream 513285 805760 ~ 821591 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other upstream 628313 920788 ~ 925398 (-)
G138741 NA other upstream 2425733 2718208 ~ 2719419 (-)
AMCG00002828 NA other upstream 3636286 3928761 ~ 3953324 (-)
G138932 NA other upstream 3709175 4001650 ~ 4002804 (-)

Expression


Co-expression Network