AMCG00002732 (wdr11,LOC107664693,LOC107741118,LOC107750394)


Basic Information

Item Value
gene id AMCG00002732
gene name wdr11,LOC107664693,LOC107741118,LOC107750394
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 485836 ~ 513387 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002732
GTGGGTTAGCCACAGTGACCCGAGATGCTTCCTGGCCCTGGGAACCTTTCTGCGGGGGGCGGTTTCCAGTCGGACCGGAAGCCGCACATCACCGGAGCACGCGTCACTTCCTGTTTACGCTGGGCCGTCCCGCACGGCGCAGCTCGGGTTCAGCAGCTCCGTCCGGCTCTCGGCTTGTTTCCGTGCGGTCTGGTGAGGCGCTCTGCCGCTATGATCCCCTACACCGTGAACATCAAGCTGTCGGCCCGGACCCTGACCGGGGCGCTGAGCGGCCACAATAAGACGGCCGTGCACTGGCTGCCATGTCTGGTCAGTGTGTCCAGGCACCTGCAGGACCCCCACctcagacaggcagagagagGCTGTCATTCCGTCGTCCTCATCATTGATCCCAAAACCGCGCAGACCATCcaggtcctggagagacacaaaGCCAATGTCGTGAAGGTGAAATGGGCCCGAGAGAACTACCACCACAGCCTGGGGTCTCCGTACTCCCTGCGGCTGGCGTCGGCAGACATGTCTGGGAAGATAATCGTGTGGGACGTGGGCAGTGGCACGGCGCGCTGCGAGATTCAGGAGCACTCCAAGCCCATCCAAGATATGGAGTGGCTGTGGAACCAGGACGCCTCCCGGGACCTGCTGCTGGCTGTGCACCCGCCCAACTACATTGTGCTGTGGAACGCTGACACCGGCACCAAGCTGTGGAAGAAGAGCTACGCCGAGAACATCCTGTCCTTCTCCTTCGACCCCTTCAACATGTCCAACCTGGCCCTGCTGACCAGCGAGGGCATCGTGTTCATCTCGGACTTCTCCCCCTCCAAGGCCCCCGGCAGTACGGGGAAGAAGGTGTACATCTCCAGCCCGCACTCCAGCCCCCTGCACAACAAGCCCGCCCCGCCCACCGGCGCCAAGAAGGCCCTGAACAAGGTGAAGGTGCTCATCACCAACGAGAAGCCCAGGCAAGTCCCGCAGCGCGCTTCATCCATTGTTTATGATGAGCGGGTGACATTCGCCGAGTCTGTGACGCTCAATGACTGCCTGCAGCTCGCGTACCTGCCCTGCAAAAGGAACCACATGCTGCTGCTGTACCCGCGCGAGATCCTAGTCGCGCCGTGCACCCAGAGGGACGCGCTGTTCTGCCTGCACGAGAACGGCTGCATCAGTCTGCGCATCTGCCGCTCCAGCTGTGCGGCGCAGGAGGACGCAGGCAAGTCACGGCCAGAGCTCCACCCAGAGCAGAGTGTGCAGGAGCTAGTGTATGACCTGCGCTCCCAGTGCGACGCCATCCGCGTGACGAAGACAGTGCGTCCGTTCAGCATGGCGCTGTGCCCCAGCAGCGAGAACGCGGCGGCGCTCTTCATCAGCGACGGCAGGGTGATGCTGTGGGAGCTCAAGGCCCACCCGGCCCGGCCCAGCCAGCACCACAGCTCGGGCGtgtctcctctcttctctccgGCCTCGTTCTGTGGGATCCCCCTGGCGCTGCATCAGAAGAGGATCCCCGACCTGTCGCTGGACAGCATGATCGGACAGAGCCTGATCTCGGGGGACGAGCCGCCCCGCACCCCCCTGCAGCAGGAGGTCCAGCTCAAGTTCCTGCTGACCGGCCTGCTGTCGGGGCTCCCGCACCCCCCCTTCGTGATCCGCATGTGCCCCCCCCTCACCACCAAGAACATCGGCCACTATCAGCCCCTGCTGGCCGTGGgtacgAGCAATGGGTCCGTGCTGGTCTATAACCTCACCAGTGGGCTGCTGCACAAGGAGCTGAGTGTCCACGCCTGCGAAGTCAAGGGGATTGAGTGGGCGAGTCTGACCAGCTTCCTTTCCTTCGCCACCTCCACTCCCAACAACCTGGGTCTGGTGCGGAACGAGCTGCAGCACGTGGACCTGCCCACCGGCAGGAGCGTGGCGTTCCGCGGCGAGAGAGGTGGTGACGAGCCGGCGATCGAGATGATTAAAGTGTCTCATCTGAAGCAGTACCTGGTGGTGGTTTTCCGGGAGAAGCCGCTGGAGCTGTGGGATGTGAGGACCGGCACGCTGCTGCGGGAGATGGCCAAGAACTTCCCCACGGTCACGGCCCTGGAATGGTCGCCCTCCCACAACCTGAAGAGCCTGAGGAAGAAGCAGCTGGCCGCCCGGGAGGCCATGGCCAGGCAGACCGTGTCCGACGCAGAGCAGAGCAACGTGGAGTCCTCGGTCATCAGTCTGTTGCAGGAGGCTGAGAGCAAGTCGGAGCTGAGCCAGAACATCTCGGCGCGGGAGCACTTTGTGTTTACGGACACGGACGGCCAGGTGTACCACCTGACTGTGGAGGGCAACACTGTGAAGGACGGCGCCAGGATCCCCCCCGACGGCAGTATGGGCAGCATGGCCTGCATCGCGTGGAAGGGAGACACCCTGGTGCTGGGCGACGTGGACGGGAACCTGAACTTCTGGGATCTGAAGGCTAGGCTGTCCAGGGGGATCCCCACGCACCGTGGCTGGGTGAAGAAGATCCGGTTCGCCCCGGGGAAGGGCAACCAGAAGCTGCTGGTCATGTACAATGATGGGGCCGAGGTCTGGGACACCAAGGAGGTCACCATGGTGAGCAACCTCCGGACCGGCCGCAACGTCAACTACAAGGTGCTGGACATCGACTGGTGCACCTCCGACAAGGTGGTGCTGGCCTCGGACGACGGCTGCGTCCGGGTGCTGGAGATGGCCATGAAGTCGGCCAGTTACCGGGTGGACGAGCAGGAGCTCACAGGTGGGGCCAGCGGCGTCTCGGCCTTCTGGGGCACGCGTGCCTTCCTGCTGCACCAGCCCTGGGGCGACTCCTACACCCTGGACCTCTCCCTCGTTGACTACAGAGAGAAGGAAGAGGTTAAAGTCCagatccaggagcagctcaatTCACTGTCCAACGACATTAAAAGCCTTTTGCTGGATCCCGAATTCAGTCTCCTGCAGAGGTGCCTGCTGGTCTCAAGAGTCAGGGACTCTCCTCCCGGCGAACTTCAGCGGTACTGCATTGCCTGGGTCACAGAGGGCTGGCAGCTGAGCACGCCCAGTGAGGACAGTGCGTCTGCCGCGCAGGACAGGCCGGTGGGGGGGCACCTGGACATCTGCCACGACACGCTGTGCGAGAGCGCCTACTTCCAGCGCTCCCAGCTGGAGAGGGTGCACCTGCAGGAGGTGAAGAGGTCCAATTACGAACACACCAAAAAGTGTGCCGACCAGCTCCTGCTGCTGGGCCAGACCGACAGGGCCgtgcagctgctgctggagaCGAGTGCGGAGAACCCCAGCTACTACTGCGACTCCCTGAAGGCCTGCCTGGTCACCACCATCACCTCCTCCGGCCCCTCGCAGAGCACCATCAAACTGCGGACTGTAAACGAAGGCCTGAGTGAAATAGATCTCCCTGACTGGTCCTTGCTGTGCTGCTGGTTTACTGTGGCCGCGTCTCTTCCAGAGGGGGTGCAGCTGCTGTGCCTGATAGATAAAGCCGCTGATGCCTGCCGCTATCTGCAGACGTACGGGGAGTGGAACCGCGCGGCCTGGCTGGCCAAGGTGCGTCTGAGCTTCCCCGAGTGCTCGGAGGTGCTGAAGCGCTGGGTGGATCACCTGTGCTCTCCCCAGGTCAACCAGAAGTCCAAGGCCATGCTGGTGCTCCTGTCCCTGGGCTGCTTCCAGAGGGTGGCAGAAATGCTGCACAGCATGAGGTACTTTGACAGAGCAGCGCTGTTCATCGAAGCCTCGCTGAAGTGCGGGGTGATGGAAGCCAACGACAACACCTATATCCTTTGA

Function

symbol description
wdr11 Acts upstream of or within cilium assembly and neural crest cell migration. Located in axoneme. Is expressed in olfactory bulb. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 14 with or without anosmia. Orthologous to human WDR11 (WD repeat domain 11).

NR:

description
PREDICTED: WD repeat-containing protein 11-like, partial

GO: NA

KEGG:

id description
K24260 WDR11; WD repeat-containing protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002732 True 3792 mRNA 0.63 30 485836 513387

Neighbor

gene id symbol gene type direction distance location
AMCG00002734 NA coding downstream 1536 483902 ~ 484300 (-)
AMCG00002731 NA coding downstream 193361 280814 ~ 292475 (-)
AMCG00002727 NA coding downstream 224663 254949 ~ 261173 (-)
AMCG00002728 NA coding downstream 257667 190340 ~ 228169 (-)
AMCG00002724 NA coding downstream 303313 172793 ~ 182523 (-)
AMCG00002733 NA coding upstream 51273 564660 ~ 579964 (-)
AMCG00002737 NA coding upstream 237248 750635 ~ 751030 (-)
AMCG00002738 csgr03h10orf54 coding upstream 249742 763129 ~ 768823 (-)
AMCG00002742 mrps6,LOC107754760,LOC107702688 coding upstream 315420 828807 ~ 829169 (-)
AMCG00002745 micu1,LOC107754762,LOC107702683 coding upstream 327871 841258 ~ 843720 (-)
G138324 NA non-coding downstream 2233 483224 ~ 483603 (-)
G138303 NA non-coding downstream 98761 302082 ~ 387075 (-)
G138310 LOC106579428 non-coding downstream 114212 366207 ~ 371624 (-)
G138304 NA non-coding downstream 143318 335737 ~ 342518 (-)
G138282 NA non-coding downstream 255056 227020 ~ 230780 (-)
G138352 NA non-coding upstream 234107 747494 ~ 748469 (-)
G138371 NA non-coding upstream 287827 801214 ~ 801767 (-)
G138373 NA non-coding upstream 290186 803573 ~ 805155 (-)
G138430 NA non-coding upstream 381625 895012 ~ 898417 (-)
G138535 NA non-coding upstream 976175 1489562 ~ 1518053 (-)
AMCG00002725 NA other downstream 296499 184121 ~ 189337 (-)
G138245 NA other downstream 338996 144926 ~ 146840 (-)
AMCG00002743 psap other upstream 292373 805760 ~ 821591 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other upstream 407401 920788 ~ 925398 (-)
G138741 NA other upstream 2204821 2718208 ~ 2719419 (-)
AMCG00002828 NA other upstream 3415374 3928761 ~ 3953324 (-)
G138932 NA other upstream 3488263 4001650 ~ 4002804 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005716 wdr11 coding NC_007124.7 CM002897.2 2732951 ~ 2828218 (+)
grasscarp (Ctenopharyngodon idella) G38382 NA non-coding CI01000005 null 4497185 ~ 4527561 (+)