AMCG00002736 (cdh23)


Basic Information

Item Value
gene id AMCG00002736
gene name cdh23
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 718130 ~ 728487 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002736
AATACCAACAGCATCTTCGCCCTGGATTACATCAGCGGCGCGCTGACGCTGAACGGACAGCTGGACCGAGAGAACCCGCTGTACAGCGCCGGCTTCATCCTCACCATCAGGGTACGGCTGGGGCGTGGGAGAGGGGCAGGGGTGGAGCTGGGGCAGAGGGCTCGACCTACTCTTGAGTCTGCGATGGTGCTCTTCTGGAAGGAGTTGAGGAGGACTGCCGGCCACCTCCAGGACCTACAGCACCAGCAGGGCCTTGTGGAGACCAACACGGCCCTTCAGGTCAGGCGTGTCCCCGTGCCAGAGCCCCCCGTCTCTTTCTCCAGGTGGCGAGGACGGGCACGGAGAGGTGGAGAGggcACAGAGCTGAACGACGACCGCACCCCGTCCGACGCCACAGTCGTCACCACCTTCAACATCCTGGTCATCGACGTCAACGACAACGCGCCCAAGTTCAACAGCTCGGAGTACAGCGTGCGCATCACGGAGCTGGCGCAAGTCGGCTTCGCCCTCCCACTCTTCATCCAGGCGCAGGACGAGGACGAGgGCTCCAACAGCATGTTCCAGGTGTTCCTGACGGGCAACAACTCGGAGCACTTCACCATCTCACCCACCTCCGTCCAGGGCCGGGCGGACATCCGTGTGCGTGTGGCCGTGCCGCTGGACTTCGAGACCATCAACGGCTACCAGTTCTCACTCTACGCCAACGAGACGTCCTCGGAGCACGCCGGCTTCGCCCGCGTCCGCATAGACCTCATCAACGAGAACGACAACCGCCCCATCTTCAGCAAGGTGCTGTACAACGAGAGCCTGCTGGAGAGTGCTGCCGTCGGGACGTCCGTGCTGCAGGTCCAGGTGAGCGTCCGTACGCCACCGCCGAGCCCGGCGATCGGGGACGCTCTGCTACCTGCGCACCCCGCCGCCAGCTGCCAGCGAGCCCCTGACGGCAGCGACGCCTGGACGCTGTGA

Function

symbol description
cdh23 Enables transmembrane transporter activity. Acts upstream of or within several processes, including detection of mechanical stimulus involved in sensory perception of sound; equilibrioception; and mechanoreceptor differentiation. Located in cilium. Is expressed in nervous system and otic vesicle. Human ortholog(s) of this gene implicated in Usher syndrome type 1D; autosomal recessive nonsyndromic deafness; autosomal recessive nonsyndromic deafness 12; and pituitary adenoma 5. Orthologous to human CDH23 (cadherin related 23).

NR:

description
PREDICTED: cadherin-23 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002736 True 966 mRNA 0.65 6 718130 728487

Neighbor

gene id symbol gene type direction distance location
AMCG00002739 NA coding upstream 10929 700320 ~ 707201 (+)
AMCG00002730 fgfr2 coding upstream 335700 350764 ~ 382430 (+)
AMCG00002729 NA coding upstream 415866 301750 ~ 302264 (+)
AMCG00002726 ate1 coding upstream 441339 263321 ~ 276791 (+)
AMCG00002723 NA coding upstream 533449 165868 ~ 184681 (+)
AMCG00002735 NA coding downstream 7847 736334 ~ 760207 (+)
AMCG00002741 cdh23,LOC106579432,LOC107679169,LOC107549130 coding downstream 48103 776590 ~ 800016 (+)
AMCG00002740 LOC107702684,LOC107660219 coding downstream 100942 829429 ~ 836163 (+)
AMCG00002747 mcu coding downstream 162188 890675 ~ 893192 (+)
AMCG00002746 NA coding downstream 171336 899823 ~ 904354 (+)
G138344 NA non-coding upstream 69118 648593 ~ 649012 (+)
G138343 NA non-coding upstream 112203 605715 ~ 605927 (+)
G138334 NA non-coding upstream 207442 509869 ~ 510688 (+)
G138333 NA non-coding upstream 210729 506798 ~ 507401 (+)
G138332 NA non-coding upstream 211420 506358 ~ 506710 (+)
G138356 NA non-coding downstream 32227 760714 ~ 762195 (+)
G138375 NA non-coding downstream 79569 808056 ~ 808613 (+)
G138376 NA non-coding downstream 80409 808896 ~ 810889 (+)
G138378 NA non-coding downstream 84806 813293 ~ 821565 (+)
G138379 NA non-coding downstream 90839 819326 ~ 841728 (+)
G138387 NA other downstream 166341 894828 ~ 898423 (+)
G138394 NA other downstream 182623 911110 ~ 913532 (+)
AMCG00002748 NA other downstream 196744 925231 ~ 930598 (+)
AMCG00002757 bnip3,LOC107653114,LOC107706607,LOC107753263,LOC106560822,LOC107582186 other downstream 360791 1089278 ~ 1093079 (+)
G138476 NA other downstream 367452 1095939 ~ 1097475 (+)

Expression


Co-expression Network