AMCG00002738 (csgr03h10orf54)


Basic Information

Item Value
gene id AMCG00002738
gene name csgr03h10orf54
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 763129 ~ 768823 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002738
ATGCTGCACAAAGGTCGCCTGAGAGCGGGAGGAGTACACCCTGCTGTTGATGGTCGACCCTGCCGTTGCTATTCTCTGTGCCAGCGCCACCCTCCGGGGGCTGCCGAAGCACCAAAATGCGCGTTTTCTGTGGCCTGTGGAATTGACAACCAGCCCCGAGCCTCTCTGAGTCCCAGTCGCCACTCTCTCCCCAGCCTGCTGTCACATCACCTCACTGCACCGCTGTACCCTCCCCCACACAGGAAGCTAGaTGGCCTGTGCTACTTCACCATTTCAGCGCCCTACAAGACGTATGCCTGCCCTGAAGGAGCCGACGTCACCATGCAGTGCGTCGTCGAGGGACACCTGACTCACCCGCAAGACCACCTGCAGAAGGCGTGGCTGTACAACCAGCACTCGAAGCAGCACTGCCGTTTGATCCACCCTCGCCAACTGCCCAGCCACAACCACACTCACGCCTACAACCCCAGTGCATTGGGTCTGCACTACAGAATGAACGCGGGCACTCTCTATATGACACTGAGCAACCTGACCGCCGCCGACTCCGGCCGCTACTGCTGCCTGGTGCTGGAAGTGGAGGGCAAGATTCGGCAGCATCATGTGGTGGAGGAGAGGGTGCACGACTACATCCTGCTCACCGTGTCTCCCAGTAAGTCCCCCCAACTGGCACTGATACTGCTGCTGTGCCCCCCCCACTACACTGGGGTTTGTAATgctgtccctccctctgtgtCATCTCTCCCCCGCACCTCACTCTTAGACTCTCTCTCCGTGTTTTCACCCGCAGGCTCTACAGCAGCAGGGTTGGCCACAGCAGGGTGCATTATGGGAATCCTGTCGCTGCCGCTGATCCTCCTGCTGGTGTACAAGCAGAGACAGACTGCCACCTCCAACCGCCgggCTCACGAGCTGGTGCGCATGGACAGTGAGGCGCAGGGCCATGAGAACCCCGTTTTCCTAGGGGAGTCTCCCAAGATGCGCACCGTGTCTCAGATCATGCGGCAGCAGTCTGAGACGGGGCGCCACCTGCTGTCCGAGCCGGGCACCCCACTGTCGCCGCCCACCCACGGAGACGTCTTCTTCCCCTCGCAAGCCTGCGCCTGCTACTACACTGCAGCGCCACTGCTACAGCACACAGCTGTAGACTCACTGCACCGCACTGGGAGTCTGCCACACAGCCGCTCGGCACAGCCCAACACCTGCAGCAACATTCCCAGCATTCCTGGCCATTTCCTGTGCAGCCCGGGCGGGGGGGTGGCCGTCTGCCAGGAAAACGAGGATTTCACAGATAAGAGGATGAGATGCGCAGAAGCCCGTCCTGCCACAGCGACTCGGCGTGACTCAGGATTAATATTTCGGGGTCTGCGTGCCGAGAGGCCAGACATGGCTCTGCTCAGTGCCCTGATTGACTGCACTCACACGCATTCCTCTGGCCTTAGTCACGCCAAGAAGCGGCCGCGTCCCGACGGAAGCGAGAGAGAAAATAAGTTCACGGCTGCCTGGGGTATATAG

Function

NR:

description
PREDICTED: platelet receptor Gi24, partial

GO: NA

KEGG:

id description
K23268 VSIR, VISTA; V-type immunoglobulin domain-containing suppressor of T-cell activation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002738 True 1512 mRNA 0.61 8 763129 768823

Neighbor

gene id symbol gene type direction distance location
AMCG00002737 NA coding downstream 12099 750635 ~ 751030 (-)
AMCG00002733 NA coding downstream 183165 564660 ~ 579964 (-)
AMCG00002732 wdr11,LOC107664693,LOC107741118,LOC107750394 coding downstream 249742 485836 ~ 513387 (-)
AMCG00002734 NA coding downstream 278829 483902 ~ 484300 (-)
AMCG00002731 NA coding downstream 470654 280814 ~ 292475 (-)
AMCG00002742 mrps6,LOC107754760,LOC107702688 coding upstream 59984 828807 ~ 829169 (-)
AMCG00002745 micu1,LOC107754762,LOC107702683 coding upstream 72435 841258 ~ 843720 (-)
AMCG00002744 NA coding upstream 77740 846563 ~ 853730 (-)
AMCG00002750 NA coding upstream 135632 904455 ~ 907446 (-)
AMCG00002751 p4ha1,LOC106578992 coding upstream 141902 910725 ~ 919475 (-)
G138352 NA non-coding downstream 14660 747494 ~ 748469 (-)
G138324 NA non-coding downstream 279526 483224 ~ 483603 (-)
G138303 NA non-coding downstream 376054 302082 ~ 387075 (-)
G138371 NA non-coding upstream 32391 801214 ~ 801767 (-)
G138373 NA non-coding upstream 34750 803573 ~ 805155 (-)
G138430 NA non-coding upstream 126189 895012 ~ 898417 (-)
G138535 NA non-coding upstream 720739 1489562 ~ 1518053 (-)
G138559 NA non-coding upstream 1164537 1933360 ~ 1933995 (-)
AMCG00002725 NA other downstream 573792 184121 ~ 189337 (-)
G138245 NA other downstream 616289 144926 ~ 146840 (-)
AMCG00002743 psap other upstream 36937 805760 ~ 821591 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other upstream 151965 920788 ~ 925398 (-)
G138741 NA other upstream 1949385 2718208 ~ 2719419 (-)
AMCG00002828 NA other upstream 3159938 3928761 ~ 3953324 (-)
G138932 NA other upstream 3232827 4001650 ~ 4002804 (-)

Expression


Co-expression Network