AMCG00002741 (cdh23,LOC106579432,LOC107679169,LOC107549130)


Basic Information

Item Value
gene id AMCG00002741
gene name cdh23,LOC106579432,LOC107679169,LOC107549130
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 776590 ~ 800016 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002741
ATGGGCTTTATTGACAGgataaaaaggcattttataCCTtttaacacaacacacaacagcacgGGGACAGTGGTGGCGCTCAGGGAGCTGGACTACGAGATCAGTCATGGGCGCTACACGCTTGTTGTCACGGCTACAGACCAGTGTCCGATCACGGAGCTGCGGCTGACGTCCAGCACCACGGGCCCCTTCGACATCACCGAGGGCCAGCCGGGGCCGCGGGTCTGGACCCTGAAGGCCACGGACGAGGACTCGGGGCTCAACGGACAGGTGGAGTACAGCATCACGGCCGGAGACCCGCAGAATGAGTTCGTGGTGTCTCCGGTGGAGGGAGAGCTGAGAGTGCGCAGAGACGCAGAGCTGGACCGAGTTTTTGTTAGTCTTTACAGTCTGGTTGACTGTGATGGGGGCAGCAGCGTGGCCGAGGGCGCGGGGGTGCAGGCGCTGGTGGCGCGGGTGCAGGCCTTCGACGCCGACCTGGGCCGCAACGCCCTGCTGACCTTCAACATCACGGCCGGCAACACGGATGGAGCCTTCTACATCAACGACACGGACTCAGACGTGCTGGTGGTGACCATCCTGGATGAGAATGATAACCGGCCCATATTCACTCAGCAAAGCTACCAGGGAGAGGTGCCGGAGAACTCGCCCCCAGgcagtgCGGTGCTGATTCTGAACGGGCCGGTCCTGGCACTGGATCGGGATGACGGGGTGAATGCTGTGGTGTCGTACCGGCTGCTTGGCCCCCGGCTGGACTTGTTCACTGTAAACTCCAGCACAGgcaAGGTGGTGACGCAGCTGTCGGCAAGCGACGCCGACTCGGGTGCGAACGGGCTGCTGTGGTACCGCATCGAGAGCGGGGCGCAGGACCGCTTCGTGGTGAATGCCTCGACGGGTGCGGTGCTGGTGGGCAACGCCTCCCTGGACCGGGAGGAGCGCGGGTCGTACCggctggtggtggtggcgaCGGACCGTGGCACCCCCCCGCTCTCGGGCACGGCCACGCTGTCGGTGCTGCTGGACGACGTGAACGACTCGCGCCCGCGCTTCCTGCTCCCGGTGCAGACGGTCAGCGTCAACGAGTCGACACCGCTGGGCGCCGTGGTGGCCACGGTCACCGCCGAGGACCCCGACCTCCGACCTCGGCTGGAATATTACATCATCGCCCTGGAGGCGCAGGACGACAACAACGCCCCTGTGCCGGGCATGCAGGACGCCTTCGGCATCGACTTCCACACCGGCGCAGTGTTCGTGCGCAGCCCACTGAACCGCGAGCTGGTGGCCAGTTTCCAGATCTTCATCTCTGTGCACGACAACGCCAGCGACATCATCGACCAGTCCGTCAGCGTCCCTAACGGTGAGCCAACCCTCACCCCACCCTCCTTCGAGAGGTTCAACCTGACGGCCGTGGCCACGGACCGGGGGCGGCCCCCTCTCTGTGGCATGGCCACGCTGTGCATCACCGTCATCGACGTGAACGACAACCGGCCCACGTTCGTGCGGCCGGCCAACGGCACCATCATGCACATCCAGGAGGTGTTTGCGACGGACGGTGACGAGGGGGTGAACGGCGAGGTGCGCTACGGCTTCCTGCAGACGGGCGCCGGGAACCGCGACTGGGAGAACTTCCACATCGACCCAGAGACCGGCtcccGCTCTCACGGAGTGTTTTCTCCCCAGCTGATCGTGGTGGCCTTTGACCTGGGCCAGCCGGTGCCGTACGAGACCACGCAGCCCCTGCAGGTGGCGCTGTCTGACATCGACGACAATGAGCCCGTGTTCCTCAAGCCCCCGCGGGGCAGCGTGCCATACCAGTCTCTGTGGGTGCCGGAGCACTCCAGCCCTGGGACACTGGTGGGCAACGTGACTGGCGCTGTGGACGCTGACGAGGGCTCCAACGCCGTGGTGTACTACTTCATCGCAGGGGGCGACAATGAGGGCAATTTCCAGATGAGCCAGGAGGGGGTCCTGCGCGTGACGCGGGAGCTGGACCGGGAGGTGATGCCCGTGTACCCCATCATCGTCAAGGCCTCCAGCAACGGCAACTGGACGCCCCCacggggtcagaggtcagccCGCCCCCGCGCCCTGGACCCCAGCCTGGACCCCACTCTGCAGGAGTCCAACGACTCTGAGGACGTGGGCAACGTCTTCACCATCGGAGAGATAGACGGGGTGGTGCGGACATTTGATCTGTTCACGGCCTACAAGCCGGGCTACTTCGTGGTGGACGTGCTGGCCAGTGACCTGGCAGGCCACAGCGACACGGCCACCATCGGCATCTACATCCTGCGGGACGACCAGCGAGTGAAGATCGTGGTGAACGAGATCCCGGAGCGAGTGCGCCAGTTCCAGGATGAGTTCATCAGCCTGCTGTCCAACATCACTGGCGCCATCGTCAACACGGACGACGTGCAGTTCCACGTGGATAAGAAAGATCGTGTGAACTTCGCCCAGACTGACGTCCTGATCCACGTGGTCAACAAGCAGACCAATCGCATCCTGGACGTGGAGAGGGTGATCCAGATGATCGACGAGAACAAGGAGCAGCTGCGCAACCTGTTCCGGAACTACAACGTGCTGGACGTGCAGCCGGCCGTGAGCGGCAGAGCGCCGGACGACTTCACCACCCTGCAGatggcCATCATCATCCTGGCAGTGCTGCTCTTCCTCGCCGCCATGCTCTTTATCTTCATGAACTGGTACTACAGGACTGTACACAAAAGGAAGCTGAAGGCCATAGTAGCAGGATCCACAGACCAGGCCTGCCCCCTGCTGGCCACATCGGgctctctgATCCAGAGTGACGtagacgaggaggaggaggagcgcgGCTCGGGCGGCGGGCGCGGCACGCTGCGCTTCAAGCACAAGCACCCGGTGGAGCTGCGCGGGCCGGAGGGCATCCACGCGGTGCACGGCAGCACCGGCACCCTGCTGACCTCCGACCTTAACAGCCTGCCGGAGGACGACCAGCGCGCCCTCGGACGCTCCCTGGAGGCGCTGCACGCCGAGGGCCCCTACGCCGACCGCAACGCCCGCACCGAGTCGGCCAAGTCCACCCCGCTGCACAAGACCCGGCAGACCATCTCGGAGTCCCCGCTGGAGATCACGGAGCTATGA

Function

symbol description
cdh23 Enables transmembrane transporter activity. Acts upstream of or within several processes, including detection of mechanical stimulus involved in sensory perception of sound; equilibrioception; and mechanoreceptor differentiation. Located in cilium. Is expressed in nervous system and otic vesicle. Human ortholog(s) of this gene implicated in Usher syndrome type 1D; autosomal recessive nonsyndromic deafness; autosomal recessive nonsyndromic deafness 12; and pituitary adenoma 5. Orthologous to human CDH23 (cadherin related 23).

NR:

description
PREDICTED: cadherin-23-like isoform X1

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0060117 auditory receptor cell development biological_process
GO:0060122 inner ear receptor cell stereocilium organization biological_process
GO:0050957 equilibrioception biological_process
GO:0050974 detection of mechanical stimulus involved in sensory perception biological_process
GO:0007605 sensory perception of sound biological_process
GO:0035678 neuromast hair cell morphogenesis biological_process
GO:0042891 obsolete antibiotic transport biological_process
GO:0005929 cilium cellular_component
GO:0016020 membrane cellular_component
GO:0042895 obsolete antibiotic transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002741 True 3123 mRNA 0.64 23 776590 800016

Neighbor

gene id symbol gene type direction distance location
AMCG00002735 NA coding upstream 16383 736334 ~ 760207 (+)
AMCG00002736 cdh23 coding upstream 48103 718130 ~ 728487 (+)
AMCG00002739 NA coding upstream 69389 700320 ~ 707201 (+)
AMCG00002730 fgfr2 coding upstream 394160 350764 ~ 382430 (+)
AMCG00002729 NA coding upstream 474326 301750 ~ 302264 (+)
AMCG00002740 LOC107702684,LOC107660219 coding downstream 29413 829429 ~ 836163 (+)
AMCG00002747 mcu coding downstream 90659 890675 ~ 893192 (+)
AMCG00002746 NA coding downstream 99807 899823 ~ 904354 (+)
AMCG00002753 NA coding downstream 191568 991584 ~ 1008956 (+)
AMCG00002760 NA coding downstream 303732 1103748 ~ 1107546 (+)
G138356 NA non-coding upstream 14395 760714 ~ 762195 (+)
G138344 NA non-coding upstream 127578 648593 ~ 649012 (+)
G138343 NA non-coding upstream 170663 605715 ~ 605927 (+)
G138334 NA non-coding upstream 265902 509869 ~ 510688 (+)
G138333 NA non-coding upstream 269189 506798 ~ 507401 (+)
G138375 NA non-coding downstream 8040 808056 ~ 808613 (+)
G138376 NA non-coding downstream 8880 808896 ~ 810889 (+)
G138378 NA non-coding downstream 13277 813293 ~ 821565 (+)
G138379 NA non-coding downstream 19310 819326 ~ 841728 (+)
G138385 NA non-coding downstream 43512 843528 ~ 849673 (+)
G138387 NA other downstream 94812 894828 ~ 898423 (+)
G138394 NA other downstream 111094 911110 ~ 913532 (+)
AMCG00002748 NA other downstream 125215 925231 ~ 930598 (+)
AMCG00002757 bnip3,LOC107653114,LOC107706607,LOC107753263,LOC106560822,LOC107582186 other downstream 289262 1089278 ~ 1093079 (+)
G138476 NA other downstream 295923 1095939 ~ 1097475 (+)

Expression


Co-expression Network