AMCG00002744


Basic Information

Item Value
gene id AMCG00002744
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 846563 ~ 853730 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002744
ATGGACGCGGAACTGAGCAGGAAGCAGAGGCTGCGCTGTCACAGAGCCGAGAGCCACACCGACGCCGGACTGCGGACTCCCGAAACCCGCTGCTTACACCACTGTCTCCGCCCGCGGATGTTCCGATGGCGGCTGCTGCCGGCAGCGGCGGTGGGCCTGGCCATGCTCTCCCGGCGCCAGCACGGGTTCTCTGCGGCCGGGCCGAGCCGACGCCGCGTGATGATGGCGACTGTGGCAGGAGCCACGGGGGCTGCTATCAGCGCTGGGCTGCTGTGGAAGAGGGCCTACGCGGAGGCGGCCTCCTCCGTGAAGCATGACTTCCACGCCGAGGCGAGGGAGGAGGCTGGGAAGGGAGATGGGtccgaggaagaggaggagcaggCGGTAGAGTCCGGCGGCGAGGAGGGGGAGCTGCTCGAGGCCCGCAAGAAGAAACAGCGGCTGGGCTTCCGGGACCGCAAGGTGATGGAGTATGAGAACCGGATCCGGGCCTACTCCACCCCCGACAAGATCTTCCGCTACTTTGCCACTCTGAAGATCatctgGGTCTGGACCAGTTCCTGGTGAAGAGATACGATGGCAAGGTAAGCTGTGAGGGAGGGGCTCTGGGTTGTGTCGTCTGGCCATTGGCTGTGGCcgtggggggggcggggtgtTGTGGAGATATACAGGTGCAGCGTCTCGGCTGGGCTCTTCAGTGTGCTTACCCACTCTGCGGGAGTGTGGATCTTACTCAGTATGCGCACTTTACTGGGGTAAGATTGTGCgcgtctgtgtgtatgtgtgtgttcattatatacaaatttaacattatttttcattattacatGTTTCTGCTGCGGTTAGACGGAACATCCCACGTGTGGATCTGAGTGGATTGctccctctgtgtctgtttcctgTCTGTACTGTCCTGGTACCAGTTCTctgacacagtgcagtgtgtcgCTCTCCACAGAAGCTACACCGTGCCAGTTCTctgacacagtgcagtgtgtcacACTCCACAGAAGCGACACCGTGCAATGTGTTGCTCTCCACAGAAGCTACACCGTGCCAGTTCTCTGACACCGTGCAGTGTGTTGCTCTCCACAGAAGCTACACCGTGCCAGTTCTCTGACACCGTGCAGTGTGTCACTCTCCACAGAAGCTACACTGATCGAGCACATTCCTCCACAGGAAGCACTGCACTGAAACGTGTCGGGAGGCTCCCGCAGTGCTCGGTCAGCTGTCAGACCTGTGATGCACTGTAGAGTCCCAGACACAGGGGCACAAAGCTGATGTGCTCGAGTCTGCGGACGGTCTCTCCAGCTCGTGGAGAAGCGCCTGCCATTATTCAGACCCCCCCCAGCGACTGTTTGGTGGCCGTTGTGatgcattggtttgtttttggtatttgcCCGCTGAATGTGTGGGGCTCGTTTGGTTGCCTGAGCTTGTTAATTGTGCATGAGGCATGACTCCAGGGTGTGACTGACAGAGTAGATAGAGCGACAAACCCACGGCAGCGAGAACCGCACAGACGGGCTGGCGTGTGCCGAGCCACCTCCGTCCATCGCTGCCGACGGAGGCGTCTATCCTTCGCGCCAGTGTCTCTTGCTGTTGCTGCTCTGCGAGATTCGGCAAATGGCAAACCCTaactgtgtgcttgtgtgtgtgcgctggcAGCGTGTGCTCTGAGCCTTGTTTCAGTGCACCATTGAAGAGTTACTGCccgtcctctctgtgtctctttggCTGCTGTGTGCTGGCACCACCAGTACGGCTCGGTCCTGTTCTCATGTGCTCTCTCTCACCacttgtgctctctctctctttctcaccactctcgctctctctctctctctcctgtgcaGTTTGCAATGTCCAATGATCTCTATGTGCTGCTCTCTTGTCTCCACATAACCAATGAAACCCCATTCTCTTCACTTCTCTCCCCCTGTCCTGTCCTGCCCTCACCCTCCCTAACAGGATTTTTGGCAGGTACGAAGCGTGCAAGACTGcgcatgtgcgtgtgtgagacCGCGAGCGTGTAGCGTGTCCAACTGTTTCCAACCGTGTTTGTTCTGGACCCCTCTGTTCCTTCCTCCTCCCACCCCAGCCACTTTTCCCACCTTGCCCGATAGGAGGCCCTTTCAGTGTCAACAGtgcagggcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgtgtgtgcgtgcactcCTCCCAGGTGTCCGTGGCTGTGTAGGTATGTGTGTCTCGCTGCCCCGCCCTGGGAGTTCCCTGCAAGACCGGGCAGGCCTGGGGGGTTGTAAAGGGTTATACTGCAGAGCTGTACAAAGGTTGCAGAAGGAGAACCTGAAGGcttcggtgtgtgtgtgtgggcccCGGTGTCCTGTCTGCGCTGCTCTGTGGTTCTGAAAGGCCCGTCTTATTAGAACCCAACCTCTCCTGCCCTCCCCCATCCCTCTGCTCCCCCTCCATCATGCTTTCTGCGCCgcagctccctccctcccagcaTGCTTTGCTCCCGCTGCCTGAGTCCCCGGGAGTGGCTGCCGTGGAGTCGGCGCGGGTGATGAGCGGTGCGGG

Function

GO:

id name namespace
GO:0006816 calcium ion transport biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002744 True 2606 mRNA 0.59 5 846563 853730

Neighbor

gene id symbol gene type direction distance location
AMCG00002745 micu1,LOC107754762,LOC107702683 coding downstream 2843 841258 ~ 843720 (-)
AMCG00002742 mrps6,LOC107754760,LOC107702688 coding downstream 17394 828807 ~ 829169 (-)
AMCG00002738 csgr03h10orf54 coding downstream 77740 763129 ~ 768823 (-)
AMCG00002737 NA coding downstream 95533 750635 ~ 751030 (-)
AMCG00002733 NA coding downstream 266599 564660 ~ 579964 (-)
AMCG00002750 NA coding upstream 50725 904455 ~ 907446 (-)
AMCG00002751 p4ha1,LOC106578992 coding upstream 56995 910725 ~ 919475 (-)
AMCG00002749 NA coding upstream 91131 944861 ~ 951696 (-)
AMCG00002754 dpysl4,LOC107582189,LOC107653119,LOC107706606,LOC107654562 coding upstream 166583 1020313 ~ 1031864 (-)
AMCG00002756 NA coding upstream 179716 1033446 ~ 1034599 (-)
G138373 NA non-coding downstream 41408 803573 ~ 805155 (-)
G138371 NA non-coding downstream 44796 801214 ~ 801767 (-)
G138352 NA non-coding downstream 98094 747494 ~ 748469 (-)
G138324 NA non-coding downstream 362960 483224 ~ 483603 (-)
G138310 LOC106579428 non-coding downstream 474939 366207 ~ 371624 (-)
G138430 NA non-coding upstream 41282 895012 ~ 898417 (-)
G138535 NA non-coding upstream 635832 1489562 ~ 1518053 (-)
G138559 NA non-coding upstream 1079630 1933360 ~ 1933995 (-)
G138594 NA non-coding upstream 1230168 2083898 ~ 2084097 (-)
G138678 NA non-coding upstream 1648383 2502113 ~ 2502314 (-)
AMCG00002743 psap other downstream 24972 805760 ~ 821591 (-)
AMCG00002725 NA other downstream 657226 184121 ~ 189337 (-)
G138245 NA other downstream 699723 144926 ~ 146840 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other upstream 67058 920788 ~ 925398 (-)
G138741 NA other upstream 1864478 2718208 ~ 2719419 (-)
AMCG00002828 NA other upstream 3075031 3928761 ~ 3953324 (-)
G138932 NA other upstream 3147920 4001650 ~ 4002804 (-)
AMCG00002935 LOC106589936 other upstream 6208743 7062473 ~ 7066350 (-)

Expression


Co-expression Network