AMCG00002752 (p4ha1,LOC107753313,LOC106578992)


Basic Information

Item Value
gene id AMCG00002752
gene name p4ha1,LOC107753313,LOC106578992
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 920788 ~ 925398 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002752
AGCTGTGGTGACAAGATGGCGCGCTGTGCGATGACCGACCTGCTGTCCACAGAGAAGGACCTGGTTACCTCTCTGAAGGACTACATCAGGGCCGAGGAGAGCAAGCTCGAGCAGGTCAAACAGTGGGCGGAGAAGCTGGACAAACTGACCGCCGTGGCCACGCAGGACCCCGAGGGCTTCCTGGGCCACCCGTGCATGCCGGCCGCAGTCCCGCCCAGCCAGGCCTCCGGGCACAAAGAGTGCGAAAAGAGCAGAGAAAGAGGAGAAGagggaaaacagaaatgtgccaCGGAGCAGCAGTGTACACGCATGCGCAGTGCCCCGGTGCAGGCCCGGCTGTGTGCGCGGCCGCACCGCTGCGCCGCCGAGACCGACCGCCAGGGGGCGCCGCCGGGCCCGGGCACGCCGCCTGCACACGGAGCGACCGAAAACCGGGCAGAGTGTCGTAAAGCGGCCGGCGAGGGGGCAGGATCCGAGGCGCAGGCGCGGCGCTCCACTCCTCTGCTCTCCGGGCTCCGCGCAGGGTGCCGCCGCGACGCTGAGCATCTCACGACGCTGCCGGCCTGCGGCCCCGGCGGCCCCGGCGGCCCGACACGCAGCTCGGGGTTTAGCAGCTGTAGTTACGGAGCGGCGAGGTGTGGAAGTTTCTGCGGGAGAAGCGGAGCTGAGCGCCGGCCGTGCGCTGCCACAGTGCGGACTCCTCCGCGCAACGAGCCCCGGCGCGGCTGA
>TU174135
GGGGGGCGTGGTCTGAAGATGACCCGTGGCTCACCTCTTACCTCAGTGTTCCTTGTGCCGTCCCCCCCACCCAGACTGCTCAGGGTACAGAGAGCGATCCGGGTGCAAGTATGTGGGAGTGGATCAGTGCCGGGTCTGCTGGTGGTCTTGCAGCTGTCGGGGACAAAGATCAGCATTTTCCCAGAAATCCCCCCCCTTCTCTTTGGAGGCGAGAGAGCGTGCTCAGATATTGTGGTTTGTTCTACTGtcctctgttttttatttacaattatgttttttaattactattactatttttaaattgtgggggggggagtattgcattttgtgtgtgtatccagAACTGGGTCTCACAGCTAAAGGCTGTGGGGGCAGAAATCGGAGGGCTGACCTGATGACTGCCGTGTTTATATCAGGTGTGGAAAGTTGTTCCACAGTGTCACGTGTCaggggcgtgtgtgtgtgtgtgtgtgttggcgtGTACCAGGGTGGGTGGTACTCCTAAAAGCAGATGAGGAATTGTGCAAATGAAAACTcattctgtctctccctctatctccaGAGCTGTGGTGACAAGATGGCGCGCTGTGCGGTGTGGcatgtgctgctgctgggggggCTGCTCATGGCAGCGGAGGCGAGCAATGACTTCTTCACATCCATCGGCCAGATGACCGACCTGCTGTCCACAGAGAAGGACCTGGTTACCTCTCTGAAGGACTACATCAGGGCCGAGGAGAGCAAGCTCGAGCAGGTCAAACAGTGGGCGGAGAAGCTGGACAAACTGACCGCCGTGGCCACGCAGGACCCCGAGGGCTTCCTGGGCCACCCGGTCAACGCCTTC
>TU174136
GGGGGGCGTGGTCTGAAGATGACCCGTGGCTCACCTCTTACCTCAGTGTTCCTTGTGCCGTCCCCCCCACCCAGACTGCTCAGGGTACAGAGAGCGATCCGGGTGCAAGTATGTGGGAGTGGATCAGTGCCGGGTCTGCTGGTGGTCTTGCAGCTGTCGGGGACAAAGATCAGCATTTTCCCAGAAATCCCCCCCCTTCTCTTTGGAGGCGAGAGAGCGTGCTCAGATATTGTGAGCTGTGGTGACAAGATGGCGCGCTGTGCGGTGTGGcatgtgctgctgctgggggggCTGCTCATGGCAGCGGAGGCGAGCAATGACTTCTTCACATCCATCGGCCAGATGACCGACCTGCTGTCCACAGAGAAGGACCTGGTTACCTCTCTGAAGGACTACATCAGGGCCGAGGAGAGCAAGCTCGAGCAGGTCAAACAGTGGGCGGAGAAGCTGGACAAACTGACCGCCGTGGCCACGCAGGACCCCGAGGGCTTCCTGGGCCACCCGGTCAACGCCTTC
>TU174137
CCGCCCAGCCTGTGTCGCACTCTCTTGCAGCCTCACTTACCTGTGGTACCTGTAGTGCCCTGCCGGTGCAGTGTGGGAGAACAGCAGGTTGAGAGGCCAGAGTGTTTCCTCCCCAGCAGAGCCCACACAGCCCACCCACTGCCCAGGACCCCCACACAGGGGCCACATCGGGACACTGCCGTTGCTCATTGCATCGCTGCTGCACCCTGTTCTGGCCTACAGAACATGTCCTTAAATAAGTGTCCTGGACATCAGGACCtgcagtatttatgtatgttctCATTGCTCAGCTAGTCAGCACActtggagtgagagagagagacgagcaGGCCGACACGATGGGGTCTGTGCCAGTGCAGTGTGGGAGCtggggccgggccgggccgggctgggctgggctgggccaTGGGTGAGGTCTGAACTAGGCTGCTCTCGCCCTGCTGCGCTGTGGGGAGGAGTGAGGCGCAGGCACTGTGTCTGAAGCGCTGCCTGCAGCTGCATGCTCTGCATTCCTGCCCTGCCCTTTGTCTGCAGCTCACAGCCGGGGCCGGGCACCctggAGCTGTGGTGACAAGATGGCGCGCTGTGCGGTGTGGcatgtgctgctgctgggggggCTGCTCATGGCAGCGGAGGCGAGCAATGACTTCTTCACATCCATCGGCCAGATGACCGACCTGCTGTCCACAGAGAAGGACCTGGTTACCTCTCTGAAGGACTACATCAGGGCCGAGGAGAGCAAGCTCGAGCAGGTCAAACAGTGGGCGGAGAAGCTGGACAAACTGACCGCCGTGGCCACGCAGGACCCCGAGGGCTTCCTGGGCCACCCGGTCAACGCCTTC

Function

symbol description
p4ha1 Enables identical protein binding activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to act upstream of or within collagen fibril organization. Located in endoplasmic reticulum and mitochondrion.

NR:

description
PREDICTED: prolyl 4-hydroxylase subunit alpha-1 isoform X2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0004656 procollagen-proline 4-dioxygenase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002752 False 729 mRNA 0.70 6 920788 923672
TU174135 True 844 TUCP 0.55 3 923010 924234
TU174136 False 516 TUCP 0.61 4 923010 924234
TU174137 False 842 TUCP 0.62 4 923010 925398

Neighbor

gene id symbol gene type direction distance location
AMCG00002751 p4ha1,LOC106578992 coding downstream 1313 910725 ~ 919475 (-)
AMCG00002750 NA coding downstream 13342 904455 ~ 907446 (-)
AMCG00002744 NA coding downstream 67058 846563 ~ 853730 (-)
AMCG00002745 micu1,LOC107754762,LOC107702683 coding downstream 77068 841258 ~ 843720 (-)
AMCG00002742 mrps6,LOC107754760,LOC107702688 coding downstream 91619 828807 ~ 829169 (-)
AMCG00002749 NA coding upstream 19463 944861 ~ 951696 (-)
AMCG00002754 dpysl4,LOC107582189,LOC107653119,LOC107706606,LOC107654562 coding upstream 94915 1020313 ~ 1031864 (-)
AMCG00002756 NA coding upstream 108048 1033446 ~ 1034599 (-)
AMCG00002755 jakmip3 coding upstream 110149 1035547 ~ 1069394 (-)
AMCG00002758 ppp2r2d,LOC105009682 coding upstream 169597 1094995 ~ 1103898 (-)
G138430 NA non-coding downstream 22371 895012 ~ 898417 (-)
G138373 NA non-coding downstream 115633 803573 ~ 805155 (-)
G138371 NA non-coding downstream 119021 801214 ~ 801767 (-)
G138352 NA non-coding downstream 172319 747494 ~ 748469 (-)
G138324 NA non-coding downstream 437185 483224 ~ 483603 (-)
G138535 NA non-coding upstream 564164 1489562 ~ 1518053 (-)
G138559 NA non-coding upstream 1007962 1933360 ~ 1933995 (-)
G138594 NA non-coding upstream 1158500 2083898 ~ 2084097 (-)
G138678 NA non-coding upstream 1576715 2502113 ~ 2502314 (-)
G138720 NA non-coding upstream 1766032 2691430 ~ 2691869 (-)
AMCG00002743 psap other downstream 99197 805760 ~ 821591 (-)
AMCG00002725 NA other downstream 731451 184121 ~ 189337 (-)
G138245 NA other downstream 773948 144926 ~ 146840 (-)
G138741 NA other upstream 1792810 2718208 ~ 2719419 (-)
AMCG00002828 NA other upstream 3003363 3928761 ~ 3953324 (-)
G138932 NA other upstream 3076252 4001650 ~ 4002804 (-)
AMCG00002935 LOC106589936 other upstream 6137075 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 6423413 7348811 ~ 7352821 (-)

Expression


Co-expression Network