AMCG00002761


Basic Information

Item Value
gene id AMCG00002761
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 1204818 ~ 1216164 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002761
ATGTCCCCTGAAGGCTGCCCACGGAGTCCGCTGGGTGTGGAATGTAGAATGATTCCCATTCCAAGGTTTAAGGGACAACCGCAGCTTTGGCAGATGAACGGGGAGCCCCCTCCCTGGATTTGGATGATCCCAGCCACTTCTGGGCTCTACAGGATAGGGGGTGCACCCCCCCCGTTCCTGGTGTCTTCTCCTCACCCGCCTCCGCTGCTGCAAGCTGTTAGCGGCTGGCAGCTTCCCTGTGATCCTTTCCTGCCTTTGATGAGAGTGCCCTCTGCACCAGAACCGGCTGTTCATCAGTTCCCTTTGCCAAACATCCAGTGGGATCTGGCTTCTCGGCCACCTGTTCTTGGATTCCAACCGTCAACAAACGTGGATTTGGTTCCTGTCTTTCCCCGTGTTTACACCTCGGTGTTGCCACCGCATTTGAGAAAAAGATGGGTGGAAAAAAGGAGGCCAGAGTACAAGATTTACTTGAACAATGCCCTCGCTATGGATGCCACGTGGATAAATCCTGAAGAAGTAAGAGTCTTCCAGAGGCATGAAAAGCCGCTGCTGATGACAAATCAAGTGGCAATGAGAGCTTGTCCGGTCGCTATCAAACGCGTTGGCAGCAACAAGAGGATTGCATTAACGGCAGCCGCGATGGTGGCGATGGAGTCGGAAGCATCTCAGGGTCTGCCTTCCGTCTCTGGGCAGCCCTTCCACCTCATCACCCTCTCACCAATCAAGATACCCGTCCTGTCTGCTCCCGTTTCAGgtaaacaacagcagcaacaacacatATAA

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04742 Taste transduction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002761 True 786 mRNA 0.54 4 1204818 1216164

Neighbor

gene id symbol gene type direction distance location
AMCG00002760 NA coding upstream 97272 1103748 ~ 1107546 (+)
AMCG00002753 NA coding upstream 195862 991584 ~ 1008956 (+)
AMCG00002746 NA coding upstream 300464 899823 ~ 904354 (+)
AMCG00002747 mcu coding upstream 311626 890675 ~ 893192 (+)
AMCG00002740 LOC107702684,LOC107660219 coding upstream 368655 829429 ~ 836163 (+)
AMCG00002759 NA coding downstream 34661 1250825 ~ 1265977 (+)
AMCG00002763 ebf3 coding downstream 213827 1429991 ~ 1436902 (+)
AMCG00002766 LOC108249661,LOC105028844,LOC106604646,LOC106611650,LOC106613918 coding downstream 266852 1483016 ~ 1492755 (+)
AMCG00002765 NA coding downstream 288833 1504997 ~ 1513084 (+)
AMCG00002770 NA coding downstream 803074 2019238 ~ 2022826 (+)
G138475 NA non-coding upstream 116002 1088439 ~ 1088816 (+)
G138399 NA non-coding upstream 266323 938147 ~ 938495 (+)
G138393 NA non-coding upstream 293738 909387 ~ 911080 (+)
G138385 NA non-coding upstream 355145 843528 ~ 849673 (+)
G138379 NA non-coding upstream 363090 819326 ~ 841728 (+)
G138502 NA non-coding downstream 159543 1375707 ~ 1395263 (+)
G138562 NA non-coding downstream 721983 1938147 ~ 1939125 (+)
G138593 NA non-coding downstream 844213 2060377 ~ 2060604 (+)
G138634 NA non-coding downstream 1245474 2461638 ~ 2463636 (+)
G138712 NA non-coding downstream 1449294 2665458 ~ 2667538 (+)
G138476 NA other upstream 107343 1095939 ~ 1097475 (+)
AMCG00002757 bnip3,LOC107653114,LOC107706607,LOC107753263,LOC106560822,LOC107582186 other upstream 111739 1089278 ~ 1093079 (+)
AMCG00002748 NA other upstream 274220 925231 ~ 930598 (+)
G138394 NA other upstream 291286 911110 ~ 913532 (+)
G138387 NA other upstream 306395 894828 ~ 898423 (+)
G138506 NA other downstream 185125 1401289 ~ 1402429 (+)
AMCG00002762 NA other downstream 190447 1406611 ~ 1410088 (+)
AMCG00002784 NA other downstream 1275922 2492086 ~ 2494594 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other downstream 1891294 3107458 ~ 3116081 (+)
G138888 grid1,LOC106607602 other downstream 2212525 3428689 ~ 3596108 (+)

Expression


Co-expression Network