AMCG00002763 (ebf3)


Basic Information

Item Value
gene id AMCG00002763
gene name ebf3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 1429991 ~ 1436902 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002763
atgtttgggATTCAGGAAAATATACCAAGAGGTGGGACGACAATGAAAGAGGAACCGCTGGGCAGTGGGATGAATCCCGTCCGATCGTGGATGCACACAGCTGGGGTAGTGGATGCGAACACAGCCGCCCAAAGCGGAGTGGGCTTGGCTCGGGCGCACTATGAGAAGCAGCCGCCCTCCAACCTCAGAAAGTCCAATTTTTTCCACTTCGTCCTGGCTCTGTATGACAGGCAGGGGCAGCCCGTGGAGATCGAGAGGACCGCTTTTGTGGACTTTGTGGAGAAGGAGAAAGAACCAAACAGTGAAAAAACTAACAATGGAATTCATTACAAACTGCAGTTATTGTACAGCAATGGTGTCAGAACAGAACAGGATCTTTACGTACGACTAATTGATTCAATGACTAAACAGgcaATTGTTTATGAAGGTCAAGACAAAAACCCCGAAATGTGCCGAGTTCTTCTCACACACGAAATAATGTGCAGCCGGTGTTGTGACAAGAAAAGTTGTGGCAACAGAAACGAAACTCCCTCAGACCCTGTGATCATTGAC

Function

symbol description
ebf3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription, DNA-templated. Located in nucleus.

NR:

description
PREDICTED: transcription factor COE3 isoform X12

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09103 EBF, COE; early B-cell factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002763 True 552 mRNA 0.48 6 1429991 1436902

Neighbor

gene id symbol gene type direction distance location
AMCG00002759 NA coding upstream 164014 1250825 ~ 1265977 (+)
AMCG00002761 NA coding upstream 213827 1204818 ~ 1216164 (+)
AMCG00002760 NA coding upstream 322445 1103748 ~ 1107546 (+)
AMCG00002753 NA coding upstream 421035 991584 ~ 1008956 (+)
AMCG00002746 NA coding upstream 525637 899823 ~ 904354 (+)
AMCG00002766 LOC108249661,LOC105028844,LOC106604646,LOC106611650,LOC106613918 coding downstream 46114 1483016 ~ 1492755 (+)
AMCG00002765 NA coding downstream 68095 1504997 ~ 1513084 (+)
AMCG00002770 NA coding downstream 582336 2019238 ~ 2022826 (+)
AMCG00002774 NA coding downstream 796385 2233287 ~ 2240892 (+)
AMCG00002773 NA coding downstream 817127 2254029 ~ 2257547 (+)
G138502 NA non-coding upstream 34728 1375707 ~ 1395263 (+)
G138475 NA non-coding upstream 341175 1088439 ~ 1088816 (+)
G138399 NA non-coding upstream 491496 938147 ~ 938495 (+)
G138393 NA non-coding upstream 518911 909387 ~ 911080 (+)
G138385 NA non-coding upstream 580318 843528 ~ 849673 (+)
G138562 NA non-coding downstream 501245 1938147 ~ 1939125 (+)
G138593 NA non-coding downstream 623475 2060377 ~ 2060604 (+)
G138634 NA non-coding downstream 1024736 2461638 ~ 2463636 (+)
G138712 NA non-coding downstream 1228556 2665458 ~ 2667538 (+)
G138719 NA non-coding downstream 1254527 2691429 ~ 2691840 (+)
AMCG00002762 NA other upstream 19903 1406611 ~ 1410088 (+)
G138506 NA other upstream 27562 1401289 ~ 1402429 (+)
G138476 NA other upstream 332516 1095939 ~ 1097475 (+)
AMCG00002757 bnip3,LOC107653114,LOC107706607,LOC107753263,LOC106560822,LOC107582186 other upstream 336912 1089278 ~ 1093079 (+)
AMCG00002748 NA other upstream 499393 925231 ~ 930598 (+)
AMCG00002784 NA other downstream 1055184 2492086 ~ 2494594 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other downstream 1670556 3107458 ~ 3116081 (+)
G138888 grid1,LOC106607602 other downstream 1991787 3428689 ~ 3596108 (+)
G138941 NA other downstream 2592622 4029524 ~ 4029924 (+)
G139176 NA other downstream 3659829 5096731 ~ 5098744 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110531625 LOC106577355 misc NC_048587.1 CM023241.2 9957640 ~ 9964334 (+)