AMCG00002770


Basic Information

Item Value
gene id AMCG00002770
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2019238 ~ 2022826 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002770
CCGTCCCCCTTGAGGACACAGCTGGGGATTAACATGTCATGGGTGTTTAAACATGTACGGAAACATCACAACTATTTCACGTATGATCGATAACCTTTTTTTATGGGGTAGGATAATAAAAGAACACTATGACAACCCTGCTTCACTTGACCAAAGTTCAGACGCTTCATCAGAGCCTTTATTGCTCTCGCGCCGATCAACGTTCACTTCTTTCCATTTCCTGCTGGGAAAGATTGAGCCGTGGGAGAAGCCGTGTCTGTGTCGACACCAGGAGCGGCCGTGGGTTTCAAGCTGACAGAGACGCCTGTGAAGAAGCGGGCAGCGAGGGAAGCTGTGCAGCCATGCCGTCCACCACAAAAACGTTGTCTTTCCTGTCCGGAGCTCTCTGCACTGCCATCTGCGCCTCGATTCTGTGTTTCACGCTAGCCTCGAACGAATGGATCTTTTCCACAATGATCTGCAAAGGCTTCAATCAAACAGAAGGGAACGGGACTGCTTACATCACTTTTGGACTTTTCCAGGCAGTAGGGAGTCGAAGCGCCTGCCCGACGTTCGGTACGCCTCTCACGATTACAGtTTTGACATCTCTAGGCGAGCGGGGGGGTGCCCCAAACATCCTTCACAACATGGTTATAGCATTCATCATCCTCAGCCTGATCAGCTCAGCATTAAGCTTCATTATCACCATGTACAACAGTGTCAGCAACCCCTTTGAGACCTACATGGGCCCTCTGGGACTGTACACCACCAGCTCCATTAGCGCCATCCTCATTCTTCTCTCGATCATCTTGTTTGTGGTGAACGCCGAGACAAGTGCCCTGTCGGCGGAGATCATAAAAGGGGACATACAGGAGAACGTGGACCTTTACGACATCCAGAACACCATGAAATACACCTTTTACCTCCTGATCCCTGCTCTCGTCTGCAGCCTCCTCGCTATCACCGTGATCTACATTTACGAGCACGCCCGATACCACCAGCAGAAGGAGCAAGAGAGGCCCACAGAAGACGCACCGAAAGAAGTGATGATGTACTAATGGGTTTCACCTGCCGGGACACTAACAAATCCCTGTTCAAATTCATCTcaaatttaaaatctgtgtaGCTTGTGTAATGGTATGTCTATAGTATTATTATGTTCCCTCCCTTGAGAGTACAACCCAGCTGGTTCTGTAGCTCAGATTAAATCGTTACCTGCTTTGGACAGAGGGAGGCGGTTGAATCGGTCCACAGACCAGAGTCACAGGTGAAATGAAAGCCACTGTGTTTGTGGAGGACCAGAGTGCAGAAATACTGGTCTAATGAAATGAGATTTAGACTCTCCCATTAAAAGACATCAAAGTAAATTTAGcccatgaaaaataaactgttctaGAATCTAGGAACAAAGTACCAAAGTGTTGTCACAGACGCTGTGGTTTTAATATGGCATTTTCCCAAGAAGGAGATGATCTTAATAATAGTAGAATATTCAAAAGACTTTACAtactgattattttgtttttaaatatctttcttTTGGGGATTGTGTGTCTATCAGGGGCTCACAGGAACTACAATGTACAGCTTGTCACGTACACAAAGAGTGTTTATTGCTGATGGTGCTCACTGAAAGAGACTAAGTTATATTAATTCAAATCCTCATTATTACACTTCACCATTATGCTTCTATAATGTATTATGAACTACTTATCTCTGTTCTCTCACCTCTTTAAGGTGTCTAagttttaacatatttaaatattcatgttcTCTGTGAATTATTAGAGCACATGTTTTCCTGTCCACTTCTACTGTTAAATCTGTCACTGAGTGATGTCTTCAAATCTTTCCTGAACGCACGTGGGATGCCATGTACATAAACAAATGAGAACCATGAGACTGGATGttcaaatataaacatatgtCTCATGTTTGTTCtaaaaagtgtttcaaatgattttgcagtcgttgtgttattatttgttgctctaaaattaaataaaggacaTCTGAACGTGA

Function

GO: NA

KEGG:

id description
K23841 CLRN; clarin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002770 True 2001 mRNA 0.44 3 2019238 2022826

Neighbor

gene id symbol gene type direction distance location
AMCG00002765 NA coding upstream 506154 1504997 ~ 1513084 (+)
AMCG00002766 LOC108249661,LOC105028844,LOC106604646,LOC106611650,LOC106613918 coding upstream 526483 1483016 ~ 1492755 (+)
AMCG00002763 ebf3 coding upstream 582336 1429991 ~ 1436902 (+)
AMCG00002759 NA coding upstream 753261 1250825 ~ 1265977 (+)
AMCG00002761 NA coding upstream 803074 1204818 ~ 1216164 (+)
AMCG00002774 NA coding downstream 210461 2233287 ~ 2240892 (+)
AMCG00002773 NA coding downstream 231203 2254029 ~ 2257547 (+)
AMCG00002776 NA coding downstream 327223 2350049 ~ 2374439 (+)
AMCG00002777 NA coding downstream 383209 2406035 ~ 2440932 (+)
AMCG00002780 NA coding downstream 427364 2450190 ~ 2459837 (+)
G138562 NA non-coding upstream 80113 1938147 ~ 1939125 (+)
G138502 NA non-coding upstream 623975 1375707 ~ 1395263 (+)
G138475 NA non-coding upstream 930422 1088439 ~ 1088816 (+)
G138399 NA non-coding upstream 1080743 938147 ~ 938495 (+)
G138393 NA non-coding upstream 1108158 909387 ~ 911080 (+)
G138593 NA non-coding downstream 37551 2060377 ~ 2060604 (+)
G138634 NA non-coding downstream 438812 2461638 ~ 2463636 (+)
G138712 NA non-coding downstream 642632 2665458 ~ 2667538 (+)
G138719 NA non-coding downstream 668603 2691429 ~ 2691840 (+)
G138816 NA non-coding downstream 1150081 3172907 ~ 3177610 (+)
AMCG00002762 NA other upstream 609150 1406611 ~ 1410088 (+)
G138506 NA other upstream 616809 1401289 ~ 1402429 (+)
G138476 NA other upstream 921763 1095939 ~ 1097475 (+)
AMCG00002757 bnip3,LOC107653114,LOC107706607,LOC107753263,LOC106560822,LOC107582186 other upstream 926159 1089278 ~ 1093079 (+)
AMCG00002748 NA other upstream 1088640 925231 ~ 930598 (+)
AMCG00002784 NA other downstream 469260 2492086 ~ 2494594 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other downstream 1084632 3107458 ~ 3116081 (+)
G138888 grid1,LOC106607602 other downstream 1405863 3428689 ~ 3596108 (+)
G138941 NA other downstream 2006698 4029524 ~ 4029924 (+)
G139176 NA other downstream 3073905 5096731 ~ 5098744 (+)

Expression


Co-expression Network