AMCG00002774


Basic Information

Item Value
gene id AMCG00002774
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2233287 ~ 2240892 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002774
ATGGTGAGCAAAGAAACTAGCAAATGTGTGCTCACAAACTCAGAGTCGGAGACGGAGGCGGCCGCGTCTCTGGCGCTAGAGATGAAATACTCCCTGGATCCCAACCGGCAGATCAGAAAGAGGAACAAAGCCCTGCAGGTGCGATTCAAGGACATCTGCGAGGCACAGAACGAGCAGAGGGAGGCGGCCCAGCAATCGGAGCGGAAGGGGGCCAAGCCCATCTCTTACAAAGTGGCGTACCGCAAGTACATGACCGTGCCCGCCAGGAGGTCCATCCCCAACGTCACCAAGAGCACGGGGGTGCAGACCTCGCCCGACCTCAAAAAGCGCTACCAGACGTTCCCCTTCGAGCGCAAGAAAGGACACGCCATGAAGACCGCCGCGGCCGTGGAGGGCTTCAAGGGCCACAACAATGGATTTGTAATCGACGTCAAGGGGAGTAAAGACAGGGACCTCTCGGGGGAGGCGGCGGCGGCACAGTGCAGCAGGAAGGCCGAGCAAACACAAGCAGTGTTGACTTCCCATACCAACGACTGCATCGTGATGGTGGACCAGCACTCCAGCAGCAACTGCGCTGATGGCAGCTGCTCCGAGTCCTTGCTGCCCAGCTGCGCCAAGGACACCCCCTGCCTCCCGGGCCCCGGCGAGCCCAGCTTGGCGGTCGATTACCAGATATGCAGcgtcaaaacaaaacactataaGGGATTACAGCACGGAGACCACGACACCAACCCGTCCGCCAAGAGGCAGATGCTGAACTTCGAGGAAATGCGGCCGTTGGAGGACACGGGCTCCAAGGTTTCGGGCCCCTTCTCCTGGAACTCCTTGACGCAGGTGGAGTGCTTTGAGAGCCCGTCGGGGCGGGGGAAGCGTAAGAAAGCCCAGCAGCTCAACGGGCTGCAGTCGCAGACGCTGCCGGCGCAGTCCTGCACGGTACAGGCGCAGTGCCAGCCGACGCAGTGCGTCGACCCACCCCTACCCATTCAGGCCTCCCCAGCCGCGGATAGCGAGGCGTGCCAGAGCGGCGCAGTGGCCGTGAGTGAAGCCTGTCAGCAGATTGTGCCCGTCGCTCAGGATGGGGACCTCAAAGCACAGCTGCAGGTGATGGAGAACCTGATCAGCTCGAGTCAGGAGACCATTAAAGTGCTGCTGGGAGTCATTCAAGAGCTGGAGAAGGGGGAAGCTCACCGAGAAGGCCTCTCCTATCGGACGGGACAGGACACGGCAAACTGTGACACGTGTCGAAACAGCGCATGCATTATTTACAGGTTGGTTGGAAATTTCCTTTATAATTTCTTCACATTCCTTCTGAGAAAGAACACACAAACATCTCCCTTGGGttcgacacacacacaccctgaaaaCCCCCCCAGACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002774 True 1377 mRNA 0.59 2 2233287 2240892

Neighbor

gene id symbol gene type direction distance location
AMCG00002770 NA coding upstream 210461 2019238 ~ 2022826 (+)
AMCG00002765 NA coding upstream 720203 1504997 ~ 1513084 (+)
AMCG00002766 LOC108249661,LOC105028844,LOC106604646,LOC106611650,LOC106613918 coding upstream 740532 1483016 ~ 1492755 (+)
AMCG00002763 ebf3 coding upstream 796385 1429991 ~ 1436902 (+)
AMCG00002759 NA coding upstream 967310 1250825 ~ 1265977 (+)
AMCG00002773 NA coding downstream 13137 2254029 ~ 2257547 (+)
AMCG00002776 NA coding downstream 109157 2350049 ~ 2374439 (+)
AMCG00002777 NA coding downstream 165143 2406035 ~ 2440932 (+)
AMCG00002780 NA coding downstream 209298 2450190 ~ 2459837 (+)
AMCG00002779 NA coding downstream 223588 2464480 ~ 2470667 (+)
G138593 NA non-coding upstream 172683 2060377 ~ 2060604 (+)
G138562 NA non-coding upstream 294162 1938147 ~ 1939125 (+)
G138502 NA non-coding upstream 838024 1375707 ~ 1395263 (+)
G138475 NA non-coding upstream 1144471 1088439 ~ 1088816 (+)
G138399 NA non-coding upstream 1294792 938147 ~ 938495 (+)
G138634 NA non-coding downstream 220746 2461638 ~ 2463636 (+)
G138712 NA non-coding downstream 424566 2665458 ~ 2667538 (+)
G138719 NA non-coding downstream 450537 2691429 ~ 2691840 (+)
G138816 NA non-coding downstream 932015 3172907 ~ 3177610 (+)
G138871 NA non-coding downstream 1135354 3376246 ~ 3378027 (+)
AMCG00002762 NA other upstream 823199 1406611 ~ 1410088 (+)
G138506 NA other upstream 830858 1401289 ~ 1402429 (+)
G138476 NA other upstream 1135812 1095939 ~ 1097475 (+)
AMCG00002757 bnip3,LOC107653114,LOC107706607,LOC107753263,LOC106560822,LOC107582186 other upstream 1140208 1089278 ~ 1093079 (+)
AMCG00002748 NA other upstream 1302689 925231 ~ 930598 (+)
AMCG00002784 NA other downstream 251194 2492086 ~ 2494594 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other downstream 866566 3107458 ~ 3116081 (+)
G138888 grid1,LOC106607602 other downstream 1187797 3428689 ~ 3596108 (+)
G138941 NA other downstream 1788632 4029524 ~ 4029924 (+)
G139176 NA other downstream 2855839 5096731 ~ 5098744 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000087_01775071_01808206 FAM196A, FAM196AB coding CI01000087 null 1775071 ~ 1808744 (+)